LOCUS BAK68264.1 1058 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3589
PROTEIN_ID BAK68264.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_35890"
/transl_table=11
BEGIN
1 MKTDIDIIAC GPRRALRVAL LASCAGMTML TLAAPARAQD ETGPQASQDQ AIVITGSRIV
61 RRDYEANSPI VTVGSELLEN SASGAIEQSL NKLPQFTPTL KNPTQGGDIQ PTAQNTPGAA
121 TISLRGIGSN RNIVLVDGRR ATPSNATMVV DINTIPSAAI DRVEIISGGA SSTYGADAVG
181 GVVNFIMKKN FQGLELDAQT AITQRGDNFE YQVSGIMGAN FDDGRGNISL SFSMNERQDA
241 RQSNRRWYRD LWENPTITGT QFFPDRPGFN IGFDPGQAIP NAVLNSVMGV TGWTNNGVGS
301 IIYTNPDGSA FAGFDTAGIA GVPANKVVDG LTYKELSNGT LGKNFTDNYL IFPLERFNIY
361 TRGNYEINDW IGVFAQGIFS KVKTTTVQEP SPLTGGWGVL VPYNSAAPQA GIPDSIVTLL
421 NARANPNAPI DLRGLLPFNR GSETEVYTYN MIAGIEGRIP GSDWTFEIYG SHGESETSVL
481 QTGFASLQRF RAVMSAPDFG RGFRSQGNAA FGGFGAATAT CTSGLNPFMD PALISQDCID
541 AIKADIKTKA VMQQTVWEAN FQGGLFNLPA GQVRAAVGAT YRHNDYKFQN DTLTTQGTSF
601 QEQALGLYPS GNSQGRIVAK EIYGELLIPL LSDLPLIRKL DLEVGARSSD YNTTGNSFTW
661 KIQGDWQVTE WLRFRGGYNK AERAPNIAEL YLAPEQTFAI AEGGDVCSLN SGLGWSANPA
721 RNSNWANVVG LCGQIMEASG DATADQQYWG VDYRTLAAAG SEAAARALVT MPQAAGQAFV
781 FPTLAGNNSL RPEKADTWTA GMVIQSPFES AMLRRLRLTV DYYNIKVTDA IGAQTVDIAQ
841 RQCFDSAFNG SYDPSSPFCL GIDRNQTGAL GNVVRTFFNN GRFQTSGIDA QLDWAFDLGP
901 GTVNFNSIFN YLIEMKSAEL DVLPLTEFAG TLGGTQNGLN GGMFRWKLLT TLGYTYGPVY
961 LGLQWRHLPS VKSATAAQVP NTSVAGAPAY DLFNLQGSFA ITRDATLRFG VDNLFDKAPP
1021 MINVDTAAVP PTLANGSYDS NNYDVVGRRF YIGAKFRF
//