LOCUS BAK67946.1 878 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3271
PROTEIN_ID BAK67946.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_32710"
/transl_table=11
BEGIN
1 MLTPLRFAGL LLVTTALTTS AAWAQDTAGT GQSDTAGSPD LAQDDQPDIS IPGGGEIIVT
61 GRRSGNIERS APAVVSVLSA ESIARTGEGD IAGALARVTG LSVVGNGYVY VRGLGDRYSL
121 ALLNGSPLPS PEPLKRVVPL DLFPTNIVSS SMVQKSYSAN FPGEFGGGVI NLTTKAVPEE
181 SFLSVSGGLA FNSETTGRLG YTYYGSKSDW TGFDNGTRNA PPALAAFFKS GNRIGDVASD
241 HAEIIGQIAN ANNAVLQRNH DMPPSGSVSM SAGTSVDVGG ATLGVIATAG WSSKWRTRDI
301 TQQNAASQDL SELARDVRRV VTDNRVVVNG LLGFGAEFGD QKLRWTNLYV RDTVKQSRLG
361 IGKNNENRPD WDFLDQDTAW YERQLIDTQV VGEFRFGDLS VDLRGSYANS QREAPYELSY
421 TYVRTNGADD PLGQLFVNRL DGNQGSASFA FSNLNEDLLS GGIDLSYPIL PTVRATIGYA
481 YTKTIRTSER REFIVRAQSD MPIEVGLLRP DYLLGQAPAE YFRYRLLENT ESDPAFRARL
541 KTHAGYAQLQ AGLADGLDLN AGVRYERGYQ SVRPVQVFTV PVNSSPSNAL KNDYWLPTAT
601 LTYSFGDMQV RANASKTIAR PQFRELIFQQ YYDPDSNVIY QGNPLLQDSE LFNAEVRYEW
661 YFAREQRFSL AGFYKKIDRP IEAFVSRLSG AVDLTGFANA PEASLYGAEV ELQKYFPIAD
721 TDHRLVTVLN YTYTQSELKV GEDETVEIYG VGSQPARNYF RDGAPLTGQS DHLVNLQLGF
781 EDTSRLSQQT LLINYASKRV TRRGSTGLPD IVEKPDFTLD FVARQGISLG KLAGELKVEV
841 RNITNTKYQE VQENETNRIY YNLYRPGTSF EASFSVKF
//