LOCUS BAK67812.1 927 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3137
PROTEIN_ID BAK67812.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_31370"
/transl_table=11
BEGIN
1 MRFKSLKFDN SFGVRSSWLC LAVSLSAMPA FAQPEAVEDA NVADETENKQ DLVITGTRLV
61 GFSAPTPVTS IGQQDLEAKA IRSVTDLMMD VPTLRFNQNN GQVSAPIGAS NLDLRGLGSS
121 RTLLLLDGRR FAATDSSGGV DVSVIPAVLI NKVEIVTGGA SAAYGSDAVS GVVNISLDSR
181 LEGVKGSVQY SETTYGDHRQ PGASLAVGKS ALGGRLHVIA AGDFYRNTGQ LDQSTRPWGS
241 HNYAVLTNPA YTTTNGQPQR LILPNSTTTQ LISGGVTALN SPAALRGIQF GPGGTVLPFD
301 FGTNVGSSFM TGGDGGTPMA TANITPRYTR YAGFGRVSFD FTDDTSIFAD ALWSRSEAFT
361 DQNPNIDSGT IVLRRDNAFM PASIRDLIPA NGTLTIGRIN EEDGTLSTTT IATVRRYALG
421 IEGTFGAGWQ YSAYAQISRN LYERADASNR INARWLNAID AVINPATGQP ACRINVDAST
481 TNDDPACVPS NLFGPGSVSA AAVAYYIGTS TSRSEQRQNV YAANISGSPM SLPAGDIQLA
541 LGAEYRTEEV SQVSDPISQA SGWRQINAQT LSGRFNVKEL YGEIGVPVLK DSAIAEELDV
601 SGALRLTDYS TSGSVTTWKV GSTYTPVRGI RFRGTVSRDI RAPNVNELFS GQASGRPIVI
661 DTSFTPARSS TVNQLTGGNT ALKPEKAKTY TVGVVLEPLF LPRFHLSIDY YTISIDSAIL
721 APTAQQVVDG CNIGVTAFCS AITRDPATNV ITDVRATLLN AATFKTKGVD IEAEYSFPVG
781 EGSVTARALA NYVSTLYNSV NGETAGQTGS GTGIPHWRGN ISLSYRTNNY LFGILGRYVQ
841 GGVYNSLYFE GGGPNSINNN HVGGRAYIDV NGSYKITPEV EIFAKVNNLL DNDPPITPQV
901 ITGASAAGSP FYDRVGRLLT GGVRFRF
//