LOCUS BAK67797.1 941 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3122
PROTEIN_ID BAK67797.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_31220"
/transl_table=11
BEGIN
1 MAPQLPFTAH SVGWRTSASR LGLVVACLMG FAGNAHAQAG SAEQQGEGIE VAEASDNGAA
61 SNQDLVITGS RITGFSSPTP VTAVSSEQLA LTGKYSVQQL QEDIPALIPN QATQMVSSPP
121 GGSTFNLRGL GAQRTLLLVD GRRMAPTSPE GTTDVNILPV SLIQRVEIVT GGASAAYGSD
181 AVAGAVNLFL KKDFQGVEAY GQLGLTSRGD SFERVSSLTW GDDFDGGRGH FVLAGSVFYS
241 DGVNDQSSRK WGQHEWAQFA NPLYVAGSNN GQPRLILTPN TRHSQMSYGG VIVAGPLRGT
301 QFGPGGTPIP FNYGQYVGAV FMVGGDGSTF SPTGNLTPDI DRRSLYGRAD YDLTDTVKLW
361 VEGLYSRSHQ RTDITPNYDS GSLTIQRDNA FLPASIRQAM IDNNITSFRF GRATLEQGFN
421 IADSIYDVKR YAAGVEGSIG SNWRWSAYYQ YADNKYNYRI FNNRIQSRWL AAIDAVLDPA
481 TGTIKCRSTL TNPNNGCVPA NVFGPNSISQ SAVDYITGTM QLLQTQTQHD AAFNIEGTLL
541 KNWAGDVHLA FGGEYRRDAT EGTVDATSAA RDWRVLNPQP LSGAQSVREG YVETLVPLLA
601 DLPFARSLDL NAALRYTDYT ISGGVTTWKI GLNYVLNDAV RVRATRSRDI RAPNINELFQ
661 SQGSNPGQII DPLTNQNIST NWSSGGNPDL VPEKADSWTA GVVLSPGFLP GLQLSIDYYD
721 ISISGAISLL AAQQVVDGCY ILKQTNLCSG VTRDPVSNAI TSVAAVRFNA DEVKTQGLDI
781 EVAYRTGLTN ISENWNGNIS FRLLGTYVGK LATTSSGVTI DRAGQVQGGG APHWRVNLNT
841 IYRDGPLTLN TQLRWVQGGK RDATFVEGID INDNRVGGRF YVNTSADYDL NDVFAVFLKV
901 DNLFDNDPPV TTNGVAAPQT ATSPYYDVLG RRYAAGVRAR F
//