LOCUS BAK67792.1 858 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3117
PROTEIN_ID BAK67792.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_31170"
/transl_table=11
BEGIN
1 MRHFDLLNTG VARMALSLMI AVSAMPVQAQ DSPADEADGG GEIVVTATRK SETLSKVPVS
61 VQAFTQNELV KQGLRNVEDL ARMTPGVSLR RGGLGVSNVS IRGISSGAGA STIGVYIDDT
121 PIQVRSLGVA SSIMYPALFD LERVEVLRGP QGTLFGAGSE GGTIRFIQPE PSVTEWSGLA
181 RGDLSTTTNG KESYEAAFAI GGPLVTDKIG IRASAYFRHE GGFIDKMVGT PVVRNTTGAL
241 GVQSLSFTNT SLYKADVNSS DTFAARLALT FKPSETITIT PSINYQSFFT PDAAPNVWPT
301 MSNFETADYA TPRWNPTIDA THLPLDVDSG EPQRDKFIMP ALKIEADLGF ADLVSTTSYF
361 KRDTSQTLDY TNIYAVSYAG RQTPNVGDVA ISTVSNRQRN WTQEVRLQSV SDGPLTWVAG
421 GFYSRNEQQA IQNSQTNFLP FLNPLFGIRN DGAPFGPGYS AFINFYGVPQ LNGTSSYLSD
481 FKAIDTQIAG FADATYELLE GLKVTAGVRV SKNKIEYTAF YDGPANNLNA PRGLACVPGT
541 GVGTVPCTAV AVGQYEPGTG PFTPRYLNSS ASGSDTAVTP KFGISYQATR DTMVYATVSK
601 GFRPSGAQIA LPGNCNPELV QLGYVNAQGQ ASSPQTYGSD SVWSYEAGAK TRMFGGALQL
661 NGSVFHIKWS NIQSTVSVQT CLQSLTANLG SATSQGFDLQ AVLKPVRELT LMANVGYTDA
721 TFDDDTIING RTLYTGGSVL PSSGSPWTVT LSGDFRYPIA DKTYYVRADY TYRSKEGRTG
781 NTDPGSINYD PNQPVNKAYT IVNGRAGIEL GDLDLSLYVN NIFNVAPMIN LGHTRNQPVF
841 TTLVTRPRSV GLTAAISF
//