LOCUS BAK67558.1 1044 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2883
PROTEIN_ID BAK67558.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_28830"
/transl_table=11
BEGIN
1 MAFLDFNTRA ALMVGVAACA CIASAAQAKP ADFDIPSQPL PSALRTFGLQ SGTSIIFSAS
61 TTGYGASNPV RGRLEPEEAL RRLLGTAPLQ PLRRGEGFTI VRVEPRPAAA QTAPANTAPA
121 PRPAAEAPAP APEAPDAESE AIVITGSRIA RSGFTAPTPV TQLGSERLEV TAAASVGEAL
181 SQLPAFRATT SPTTGGITIG AGGARTVDLR GLGAQRSLVL VDGRRFVPST VAGAVDTNLI
241 PGVLIERVEL VTGGASAAYG SDAVAGVVNF ILNKRLEGFR FNAQAGISQR GEDSDQLIAA
301 AAGSSFADGR GHVVVGGEYN NNRGMGGCYD YSLCAQEWQV LTNSGFATNG QPARIISSDV
361 HTATQTYAGK INGPTPLASI QFDDAGNPVP FVRGEYPSIF MRGGSGHGQN PFRSAGLLKV
421 PVERYALYGR TEYEMGAITP FLEVSYGRVR VTTPGAQTRD TALIIRRDNP YLPQSIVDQM
481 TQLNAQTLTF GRVGQDLGVA MGDNRTSTFR AVAGFDANLG NGWRADAYYQ FGQTDTRQVV
541 SNNRITANFN RALDAVDEGR FLTGTANGNI VCRDTLSPNA AVRDAAAGCR PLNLFGQYRF
601 LPEARDYAFG TSTQTTRFQQ HVVAANLTGE LFDFGSGPVS IAIGGEYRSE RVRGSADDIS
661 RTNGFYISNA SDFGPETVNV TEGYVETVVP LLRRLPGAEL LELNAAIRRT HYNTSGAVTT
721 WKVGGIYEPV AGLRIRGTRS RDIRAPNAAE LYTPLVAAQG SVFDLQNTEQ VLARVFRGGN
781 DALHPEIADT WTAGLVLQPR MIPGLRFSAD YYDIKIRDAI DLVGAQVIAD RCFQGGESYC
841 ALITRDPARN NMITEVVDQY LNVNEIKTRG IDFELDFSRR FGADNRIAIN LLATRVFELV
901 QVDATGAINR AGQTGRQVSG PLGVPEYTLD GTLTYEKGPF GVTLLGHYIP KGSYDAGLIG
961 PDDPDYKTTL ANSINDNVVE DMLTFNLSVR YTIERPGGAT MQIYAAVNNL FDVDPPIAPG
1021 NSVTNPVFFD QTGRAYRAGV RVKF
//