LOCUS BAK67555.1 824 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2880
PROTEIN_ID BAK67555.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_28800"
/transl_table=11
BEGIN
1 MLKTVLAAGV AIAALNTPFV PAYAQDAAPE DANETTGDAI IVTGSTRAER RFDVSYAVNT
61 ISREDVEKIA PVNFADLIGQ LPGFQTEITG GEVQNIYRIR GLPNDGGFVS FQQDGLPLFH
121 ENDGVFFRGD AILKHDLMTS HVEVVRGGPA PIYASYSGAI INAITVTGSE EARGKVQVTL
181 GDTGLYRLDA YQAGKLAENT YYAVGGFMRY HEGYRDNGFP NDKGGQIRAN IKHVTDNGFI
241 KLNFNYVNDH NVFYLPIPTA DPRDPGKSLD PYIDYFTGTM NSPAFRHVNL KYRDGNGAIQ
301 SRNSDLSDGR HMQMVNVGAH YEGDFDGWLV TAAAGYTQGK NDFTAFYSTT NPVDGNAFAN
361 GYLNRTGGAP FGAVRFGYVL AGTNTVYDPY AASGLVMQGQ YRDIHSSFYS GQANLSVARK
421 FDTGIGTHDI KLGVYGSLYG EDSRTLYQNY LIEVAGQPRT LDLVGYNAAG QVVGRVTDKG
481 VLNYAATLNQ GDSDARMVAV YANDTWEIVP GLRIDGGIRH ERYRYEGWAA LTEQANLGDA
541 TTLADDTTRA FTGVIQNRKL SPNVTNWTVG ANYDFSRHVG IYGRASHLET PPNVQSVMSI
601 NPTIITTVAD QFEAGLKLSM GRSYLYVTGF YTNFDPLNAS FLAFDPTTGR NDVNVPFIGE
661 AQVKGIEFDG AWSVTPWFTL NAALTVSDPK YKNFESATGA DPEQAEGNQI VRQPKIYGNI
721 RPSFDFTTGD TDVSIYGRYT YMGKRYVDLY NNTALPAYGT VGAGVTVKHG SWQLQVVGDN
781 LFNAHGLTEG NTRTDSLSGQ GSAEAIYGRP IFGRNFRLVI GKSW
//