LOCUS BAK67550.1 1005 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2875
PROTEIN_ID BAK67550.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_28750"
/transl_table=11
BEGIN
1 MSRATGEGSG MTSTTQLKSG ALSRTLAGLL LCGASALTAP AFAQQASGDA AVAPQEEEVD
61 QAIIVTGTRI GGVAPVGSSL VQLGQEEMQG TGLTSTADML NTVPSILRLG AGDNYAGGQA
121 QQGNTLTAFT FGKSPNIRGL GPGATLSLVN SHRVPYEGAN MNVFDGDNYP SQMIQRIDVV
181 QDGGSALYGA DAIAGTVNYI LRRPETTLEV YGGYRKNDGQ EGWYVTGIGG LKWGEGSAME
241 GGFIASYQHS YQDSFEASAR PDLYNDDLSP YGGPAPSLYA APGNVVVNGR YYAIPARQDG
301 TTIKLADLLS SPRYFNTWTG IEVIPRIKAD RFALNAEQRL TDWLRLFGDA LYVRREVAIN
361 GPNSSTSNRV TNFGQLPLIP NSNPFSPCNP SHYPGGVVTG PAELLAACQT GSLAVAYSTV
421 YDIGSPRRTA TTKTWSYGGG AELSLPYDWS LIVSAYAGTY DEPSLTTQSG GAPAPNFATF
481 NFFCDPTAFA CTDSATAQAI LAGGRSLENY AKHDMQVYAA SASGKLFTLP GGDLKLAVGY
541 ERYEGSLLVQ NNFGGNNLNK RTVSSVFGEL FIPIVGPDSN VPAIHRLELN ISGRIDDYSD
601 AGSTSNPRIG ANWWPTDGLK LFGSWGTSFR APGLADNDPF SQTGVIPGTV MGNQISSAIC
661 TGCQTLGMAA IYQAIGGANR NLSPETSETY SLGAEWTPRN IPGLIVSAKY WWLSYEGQVG
721 APAFAVGTVP AINQQIYNSQ IIYNPTYFPT LAADNPVAFF GEFPTIDQGN PACAAAFGQA
781 VNTQALFDAM INCYNSGGER GGLFGPPTAA NRVLALVSGR RINAGKTLGK GIDFNVSYAF
841 DSSIGSWNLG AVASYTMDWK VSPIPGAALV QEVNQLGFPL TWQGRGTVGW QQNFGFGRLF
901 INGFVNYRNG YEIDAAQLPI GVPASYAKID SYTTFDLTLG VDTGDALGWM PAKDLNLTFS
961 IQNLFDTDPP LVVNQAGLAG SAIRFDPTYG SPLGRVFQVH LGKKF
//