LOCUS BAK67492.1 834 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2817
PROTEIN_ID BAK67492.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_28170"
/transl_table=11
BEGIN
1 MKKVTLASAS LLSLAISGAA MAQEEASRAM PDDIIVTATK MATNVQDVPI AITAVTAETL
61 TQRSITSSAD LGAIVPNATF RQTGGAYGRG LSAFMRGIGQ ADTAVSQEPG VAFYVDDVYY
121 PLIHGSIFDL LDLQHVEVLR GPQGTLFGRN SLAGAINLVS REPEQDTSAY VELTTGIRER
181 FDVRAGFNVP LTDTLALRVS GFSKNQRGFQ ERLDFRCEMI RRGTPELAGN LPFLVGENIA
241 PASNDPDSCV VGHNGGTRAY GMRGALKWEP AHNLAISLIG DYSNDTSPVQ PDQLLSVDAS
301 RSISNPGLAG QGAYFSVPGE TPFIYDSRFV TGDPYKTYAT YRDAIPSGTV IPGTFYNGSV
361 RRGGIGYEPI NPVKMWGVTG KLVYGLTDQI DFTFIAGYRD VSVGYTFDVD QSPLTVELTR
421 NLTTHTQHTL EARLAGRMDW IDWVVGAFHY RADENERRVI IAPFSNLQRY RNDYYQPKND
481 SIYANVTLRP FGDRLGINLG GRYSDDSKPL QFDNRQDEVP TNDIVFDQVL STKRFDWKAG
541 LSYELNNSLL AYASAATGFR LPSFNSRPFQ PSQIYQTPGD ELVAYEFGMK GDFFDRRLRL
601 NGAAFYTDYK QRTTSTSGSE YQLDPQGNPL PGTQVTEPLP GGPAGSTRCR TRTPAEISAG
661 VPGFACVPRT YATNTPGKVY GIELELRAEP VDGLTIDGSL GYAKFDSPDL KALSRVTDRL
721 IGVPEWNASA GVQYEAEVPA LAGTITPRVD WYYQGAISFS AARRELIADP YSLFNARLTY
781 KNEVHDFSVS LAVTNVFNKF YYVSLLDYSG LGFPNTNAQP SVPREWALTL RKQF
//