LOCUS BAK67314.1 965 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2639
PROTEIN_ID BAK67314.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_26390"
/transl_table=11
BEGIN
1 MAVQSQRFFR HYLLSSAALF STVLVCVMPS AAFAQEATDP AVGGSTNSAA AGASIEGGNN
61 DIVVTGSRVI SDGFSAPSPV TVVAAQQLLT STPSTIGEAL NKLPQFANSV RPTTSQFAPE
121 SGAATQLNLR SLGAQRSLIL LDGRRVTPST SDGIVDVSIL PEELVQRVDI VTGGASAAYG
181 SDAVAGVVNF VLDTRFKGIK AAAQAGITQR GDNETQKISL TVGANVGERL HIVASGSYFM
241 QSGVRDYRDR DWFQSCAPLV LAGQTPLRVR TCNLKTPLEA DGGLIVSGPL RGIQFGPGGV
301 PQPFTFGNPL TPSQMVGGSG EDQGLDFTPV AAIERKTAYA HALYEASDSI DLYADALYGN
361 SLAKFGGTLM GFYGNTALTI YRDNAFLPPS VAAQMDAAGI TQFTLGHTMR QTGLLRNLGE
421 SETVRFSGGF KAKVGGDWSL DGHYGYGTNL QTIRAEGNLT IERVFDAVDA VRDPVTGNIV
481 CNRSLTVPAV QGCVPFNVFG PDAASQAAID YIRSSPYGGT GSRTFERTKQ HVAEIVLSGT
541 PFATWAGDVA IAVGGGYRKE SVNRTVDPGS DGLKFPNGQP RGVANTRYAT STFGAYFLSN
601 QRPIVGGYDL WEVFGEALIP LADGVPFAQK LDLNLAGRHT SYSTSGGVNT WKVGLNWQPI
661 DDIRFRATRS RDIRAPNLRE LFSTSAAGAS AAVDPFRNNE TPVVVSQANG STALKPEVAD
721 TLTVGGVFTP SFIPGLNISA DYYTVQIDDA IGQLGVQNII DQCFRGATAL CPRLERAPNG
781 VLFRVDNGFL NINRLKTRGL DIEGSYRTEL GSGSLGLRAI ASRVFELSTL IPGSTVVNRA
841 GQVGVDGGVP KWTFNINATL KFGGFTASVD ERIIGAGTYD ATFVEGVTID DNHVPAITYT
901 DLSLTQDITT ENGRKFQIFA TVNNLLDQDP PGNAGNFFVF ATRPTNTFLY DQIGRSFTVG
961 VRVQL
//