LOCUS BAK67234.1 678 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2559
PROTEIN_ID BAK67234.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_25590"
/transl_table=11
BEGIN
1 MRQEAPMILR KLSISLCATA AMAAPDPLLA EAPPSPEDII VLGRGLDLPP GTPAYGSVTI
61 GRERLEEDAS GSVEHALADV AGFQQFRRSD SRSANPSAQG VTLRALGGNA TSRALVLLDG
121 VPLADPFFGS IPFNALPLET IGAVRITRGG GAGAFGAGTV AGTIELFSAD RAQLPLFGAT
181 ALYGSRDAQQ VNASFSPDLG AGFVSLSGSF SRGDGFWTTP ADQRGPADVP ARYRSWSVTL
241 RGVAPVGDTG EIQARVNLMR DDRTLRFAGA DNGQAGQDAS LRYLSRGRWQ VEALAYVQLR
301 NFDNIVISSS SFRPTLDQRN TPSTGLGGKV EIRPPVGADH VLRIGVDSRF ATADMYEETL
361 NATTGAAMVR RDATGRQVTS GVYIEDDWTL GDVVLTAGAR ADRWEISRGR FTERNATTGA
421 VSTTVHPDRS DWEASVRGGL LWRTSEGLSL RAAGYTSFRL PTINELYRGF TVFPVVTQAN
481 AALSPERLKG GEGGIDLTPV PGVRLSLTGF YNRLENAIAN VTIGTNTRQR RNVDAIVSKG
541 VELTGAIEAG TFDLSASYAF NDSKVEASGN AAPLDGMRPA QSPRHSASAT LGWRAPAQAR
601 LALTARYVGP QFEDDLETDR MPGVLTFDGY ARVPLTPNVA LVGRVENLLD ATILTRKVGE
661 SIDLGTPQTF WLGLRIGA
//