LOCUS BAK67190.1 990 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-2515
PROTEIN_ID BAK67190.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_25150"
/transl_table=11
BEGIN
1 MKKSVLSLML ASAIVAIPGG PAWAQDEDGA ASTSSIVVTG SRIRQPGLSA LSPVTTVGEE
61 DIKLTGAMRI EDVVNTLPAF TAGQGAFIGG QATGTANANL RNLGSTRTLV LIDGKRLMPG
121 SPMALVPDLN FIPGNMIRRV DVVTGGASAV YGSDAVAGVV NFIMDRRFEG VQISAQHSFY
181 QHNNRDSIVA PLARAAGYDV PTGSVTDGHG LDLSAKIGIN LEGGRGNITV YGGYRKLDAS
241 FQGNRDYVAC ALGATGPTGS THACLGSSTT SPARFVLNSG SGAEVTLDPA GDGNTFRAYN
301 VLRDSYNYTP INYFQRPDRR YTMGAFASYE VSKAFVPYLD VMYMDDRTVA QLAPSGIFGQ
361 IFQINCNNPL LSASQMSAIC GAASGTSATR GVSIGKRNVE GGGRLDDLRH QSYRIVAGAR
421 GDLGDAWSYD VYGQFGLTTL TEMFQRDFAL SRIGRALNVV TDTRAGSATF GSPVCAAVLN
481 GVDPNCVPYN VWSVNGVTPQ AVNYLQIAAF WTGDTKEKVA GLSFSGDLGK YGVQLPWAEN
541 GVSVALGAEY REESLSSRFD ETFRNGELAG QNGSRRVNMD GKFDVFELFG EANVPIVEER
601 PLLHSLSLNM GYRFSEYSTA GSTHTFKIGG DWAPSRDIRF RAGYNKAVRA PNVSELFSPL
661 GAPGFTGTDP CAGPAVDGRV NGYTFAQCAA SGVTEAQFGT IIANPAGQYN SRTGGNPGLR
721 PETAYTWTAG FVATPTFLPG LSITADYFNI RVEDTIDVIG GNLILRQCVQ TADPFYCDLV
781 LRSPVNGSIY LGNDGYVLDI RRNTGSKSTS GIDLSVDYRL ALDEVGLGNV GSLAMSFNGT
841 WLGSLKTEPL PGLGTYECKG YFGLTCGVPS PEWRHRARLV WATPWVGDFS LNWRYIGAVT
901 VDRASSDPLL TGRVAEVDRR VGDRHYFDLA YSTNVAGQFN LRAGVNNLFD KAPPLISTSS
961 LTGVLGNGNT YPQVYDPLGR YIYVGATVTF
//