LOCUS BAK66232.1 1391 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 DNA-directed RNA polymerase subunit
beta protein.
ACCESSION AP012222-1557
PROTEIN_ID BAK66232.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /EC_number="2.7.7.6"
/gene="rpoB"
/locus_tag="SLG_15570"
/note="protein synonym:RNA polymerase subunit beta"
/note="protein synonym:RNAP subunit beta"
/note="protein synonym:transcriptase subunit beta"
/transl_table=11
BEGIN
1 MATKALPPST AGESAKKRIR KVFGNIHEVV QMPNLIEVQR ESYEQFLRSN PAIGYVSGLE
61 KTLRSVFPIR DFAGTAELDF VHYELEDPKY DTEECRQRGI TYAAPMRVTL RLIVFEVDAD
121 TETRSVLDIK EQDVYMGDMP LMTGNGTFII NGTERVIVSQ MHRSPGVLFD HDRGKTHSSG
181 KYLFAARVIP YRGSWLDFEF DAKDIVNVRI DRKRKLPVTA LLYALGLNSE DILGEFYNKI
241 TYVRGQNGWQ IPYTAEAWRG QKPMFDIVDA KTGEVVFAAG QKISPRAALK AQKDGLESLV
301 IPTEEIYGRY SAYDLINETT GAIYIEAGDE VSPENLAKLD EAGIDRIELL DIDHVNTGPW
361 IRNTLKVDKA EDRDHALSDI YRVMRPGEPP TRETAEALFE GLFFDGERYD LSAVGRVKLN
421 MRLGLDAEDT ITTLRREDIL AVVKELVNLK DGKGEIDDID NLGNRRVRSV GELLENQYRV
481 GLLRMERAVK ERMSSVDVST VMPNDLINAK PAVAAVREFF GSSQLSQFMD QTNPLSEITH
541 KRRVSALGPG GLTRERAGFE VRDVHPTHYG RICPIETPEG PNIGLINSLA SFSRVNKYGF
601 IETPYRKVVD NKVTDEVVYL SAMEEAKHTI AQANAELTED GQFVEELVSS REAGEFLMAP
661 RDHITLMDVS PKQLVSVAAS LIPFLENDDA NRALMGSNMQ RQAVPLVRAE APFVGTGMEE
721 TVARDSGAAI AAKRSGIVDQ VDATRIVIRA TEDVEPGRSG VDIYTLMKFQ RSNQDTCINQ
781 RPLVKVGDHV SAGDVIADGP STELGELALG RNSLVAFMPW NGYNYEDSIL ISERIVKDDV
841 FTSIHIEEFE VMARDTKLGP EDITRDIPNV GEEALRNLDE AGIVYIGAEV EPGDILVGKI
901 TPKGESPMTP EEKLLRAIFG EKASDVRDTS LRLPPGVAGT IVEVRVFNRH GIDKDERAMA
961 IEREEIDRLA KDREDERAIL NRATFNRLRE MLIGQVATAA PKGVKKGVEI DEALLSEVER
1021 HEWWKFAVAD DTRQTQLEAV KAQYDEAVKL IVEKFEDRVE KLQRGDELPP GVLKMVKVFV
1081 AVKRKLQPGD KMAGRHGNKG VISRILPIED MPFLEDGTPV DIVLNPLGVP SRMNVGQIFE
1141 THLGWAARGL GQQIKQALQD WREANPGVTG GEMPEAVKER LLTVYGDNYA ADIEARSSEQ
1201 IVELASNLVT GVPIATPVFD GAREADVSAM LELAGLDPSG QSTLFDGRTG DAFDRKVTVG
1261 IIYMLKLHHL VDDKIHARSI GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL QAYGAAYTLQ
1321 EMLTVKSDDV VGRTKVYEAI VKGDDTFEAG IPESFNVLVK EMRSLGLNVE LAALEDMSDE
1381 DGDGELPEAA E
//