LOCUS BAK66201.1 834 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-1526
PROTEIN_ID BAK66201.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_15260"
/transl_table=11
BEGIN
1 MKNRMKEVAS TLALASAIVI ASPVLAQDTA AAPREQGIQD IVVTATRQAT NMQDTPIAIT
61 AVTSEALEER GLKSVADLTA LVPNAEFRRT HGAFGPGVSA SIRGIGASDT NIGNDPTVAY
121 YVDDIYYPTL LGSNFDLLDI GHIEVLRGPQ GTLFGRNSLA GAVNIVSKQP NFNEQSAYVE
181 LNVGQYNRTD VRAGFNLPLG ENLALMVSGA FKKRQGYQKM LDFTCEMNRR GTPELAGDVP
241 VYNLATTSNP RYTPDDCVVG HLGGEDVQAV RASMAWEPAS NVRLTVTGEF IRDQSENPAD
301 TTLSLNPALN TPNENLTFGY YGVAYDSRFI TGNPYTTYET YNDPIGAGTV IPGHTYYNGM
361 STHGGHTLPA RNDLTNWGIS AKLVVGLTSD IDLTAIAGYR SLDETHIYQK DGTPLMTEMT
421 TNVVTNDYTT GELRLSGQHG WIDWVAGAFY FEASGFQHAV IDQPRTGLIR YLNNSFDPVS
481 KAVYANATVR PFDNGLSFTG GLRYSDDKKV VSLSNLVETT PNPTDIEFDV TPEAKVLSWK
541 LGVNYELSAN MLVYASAATG YTLPGFNPRP QQPSQIAQFD GNESVAYELG AKLDMFDRRL
601 RLNLAGFYTD FKTRPTALAG QELLLGPDGQ PSPGNSILIP LPDAPEGSTT CRPRTPAEIS
661 SGVPGFSCIT RSFYLNTPAT IWGVEAEATA RPIDGLVLNG ALGYHKFSSP DVDNRAINPR
721 QPEPFWSANA GIQYTIEGMP LGGTLTPRLD WSYQGSRAPS TRTTAWNQPG YSLFNTRLTY
781 DLPDAGFAIS AGVTNLFDKL YYENFFILQD SGQSNVQGQP AAPRQWYLQV KKTF
//