LOCUS BAK65915.1 843 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-1240
PROTEIN_ID BAK65915.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_12400"
/transl_table=11
BEGIN
1 MRVQHACSTA LLAISTVIAA PAWAQGESTP QDNPGADPTD IIVTAQFRET RLQDTPIAIT
61 AVNAAMLEQR AQTNVSDIAA QAPNVTLQPQ GQFNGSGLVA FIRGVGQVDF NYALEPGVGI
121 YVDDVYYPTV TGSLLDLMDL DRIEVLRGPQ GTLAGKNSIG GAIKLFSTKP DGSGRGSFQV
181 TYGSFDRVEA RGFADFAITD KLFARIAGSA QSRDGYVTRL DYGLTHPGSG VPSNNNTGKG
241 VELGTLGGKS YVAGRLSLRW LPSETVEINI AGDYTRDNSE AGASVLLHAA SDANGQNPWI
301 DPITGLQVTN RTGTNADGQP WVANTITGAP ILYDCKFVPY GRYSCDTPPA GYDRRFISYE
361 TFQDQMAPTS QSPYKPYAVN PIQHFNGWGV QGTIDIELAP TLKLTSITAY RRYDSSWAQG
421 EDGSPLPSQQ LLQTLEHRMW SEEIRLNGSL GEGLFEYTLG GFYHDQDGSL NARVDLNYAG
481 IDFIHGPDST PSTSKALYFN GTFHATDALN ISGGIRHSWD EKTYTYFRSN PDGTIPGPLP
541 CAFFLGAPTA GPTGIGNDPN CLLLGLYDVS DTFKGERTDW RVAADYRFSE AAMVYAQVTT
601 GYKGGGVNPR PFFGPSSPNN QLKAFNPETL TTYEVGFKTD LFDRKLRLNG ALFFNKYNDI
661 ILTLSACPIS PCLQPNNVGK ADVKGVELEF TARPFDHFTI DGSFSYLDFE YTELNGTEAE
721 LGGLTLDMIT PYTPKWKWSG GIQYDFPLGS DTLTARLDGD YQSHMYAEAI NDPRYNKIDG
781 RFLMNARLAY RTADNDWTFA LEVRNLTDKY YYTSLFDQHF SSSTVSAGVG LPRTWAATIK
841 RNF
//