LOCUS BAK65608.1 976 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-933
PROTEIN_ID BAK65608.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_09330"
/transl_table=11
BEGIN
1 MPALILQPRL PAFAAGASLR ALGVSLALLA SPALAQEPAP LPQDTAVPQE EPVSEEAIVV
61 TGSRIARSGF DQPTPVTVVG SDQIQRQAAV NVAQVLNDLP SFRPQATPTT NAIFTNNIGA
121 STADLRGLGA NRTLVLVNGR RVVPSTVQGG SFASAGAVDL NMIPASLIQR AEVVTGGASA
181 AYGSDAVAGV VNILLDTRLN GITGSAQYGI NDVGDGKQYM LSLAAGTGFA GGRGHIVAGI
241 EYSDDKGSRD CYSRDWCAQS YNTVSNPYVA GSGNTRRVLE GQPGVLILPN TRTATAAENG
301 LIPRLPGPPN PALIASGLLG MEFRPDGTMV PHDYGAYYGV PIFQSGGGDP QQAFYMNFPI
361 SAPVERLNGF AHAEFELSDV VTIFAEGSYG RVKGSTLSAQ RRDLGNLTIR ADNAYLPDSV
421 ANAMAANGLA TIPFGRVWND IGPQRAEVTR ETYRAVVGLN AKMWGDWTLD AYYQFGRTDY
481 SQRGYNTTIT PRINFAMDAV DDGSGNIVCR GVRDGVAAAA GCVPINPFGN GSAITNPAAV
541 AYVTGTVEQD TRLTQNVVAA TMQGTLFEGW AGAIKGATGV EFRQDLARGD ADPISRALQF
601 YTGPGSPISG KVDVFEAFGE LVVPLMPGAE VNGAVRYTDY STSGDVITWK VGLDVAPLDW
661 LRFRGTRSRD IRAPNLFELF GPTQTSFQSV PNPWRGGAQD LPMVLLGGNT TLVPEEADTW
721 TVGVVLQPNI GSAGRLRLSV DYYDIKLEKA VSTLGGAVIV NGCFNGVTEL CSLITRSDTD
781 EITQIVNRNI NLGSLTTRGW DVEASYTLPF DLLGGQISLR GLATIVDDLI TDSASGRVNR
841 AGMNGSPVSL PSGVPDYTIN GYVTYTSDLA TLQLQVRHIS SGVYNAELIG PHQDGYDPLL
901 PNSISDNYIG AWTYFNINAG VNVWKRGDQK LEIFGVINNL FDKDPPKDAP SSFGPTNNVL
961 YDVLGRAYRI GARFKF
//