LOCUS BAK65601.1 848 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-926
PROTEIN_ID BAK65601.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_09260"
/transl_table=11
BEGIN
1 MTVLRHSLAR TISRIGLASS SILASAAILA TAAQAQAQGT ATAAADENDD DVIVVTAQMR
61 EQNLQDVPLA ITAVSGAQLE ARSQTRLTDI TAQSPNVILQ QNPAGSGNSM RAFIRGVGQS
121 DQSPSVEPGV GIYIDDIYFG TVTASAFDLT DLDRVEVLRG PQGTLAGMNS QGGAIRLYSK
181 KPQGEGGSVE VALGNFKRRD IKASADFTVV PDALYARITG VTRNRDGYVT RYDYACLNPS
241 DPDVVSGAIP RLAAVGNDCK LGELGNQSMY ALRGSLRLAP AGSPLEINVS ADYTRDESAT
301 QASVLIASAE SASKGTASPS NRSGMSIPYQ GVAFDDRFVP YGKYRRASSP LNDGYASYAN
361 FYDPGVMYSA AGPQPAGAPP SAIPAGAPLG PFIAPSASQV DGWGVSGTID YEISPFFSLK
421 SITGYRKYFS QSGSDNDNSP IVFIQDNSKF HHRQFSQELR LSGNLVNDTV HVTLGGYYYD
481 AATRYEARIH TPFSGFCAAA TPCFSFINDD TADLTTYAGF GNVAWDVTDR LTLEGGIRVT
541 HQRKDYTFGR FNPDGLGEYL PLSNPENPLS GQVGTYKETL TDLRLAASYK VTPDVMLYAQ
601 YATGFKGGGI SPRPYSFYQI RPFGAEKLKS YEVGFKGDFL DRRVRLNVTG FYMDYEGYQG
661 VPQVCIGLDG QELPPDRGGV SGLCGQYLNI GNAEVKGFEL ETTIRPVRGW SIDGSWSLTD
721 FTFTSINYPT TSIVVGASRP GIGKWKWSIG TQYEADLGFG TLTPRVDVNY TPGYCGDFLC
781 SPNAQVAKFT VVNARIAFQT IEKDWTVAVE ATNLFDKYYF LNKFQNAFYT TGQPGRPREV
841 ALTVRRNF
//