LOCUS BAK65420.1 854 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-745
PROTEIN_ID BAK65420.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_07450"
/transl_table=11
BEGIN
1 MTLPSALLLR TTAICGVLLL TQPYAALAQQ TVAPEDGAEE ADEIVITGSI LSAQQDSIAL
61 KRNAPNLSDV AASDAVGRFP DQNAAAALSR LPAVAVQRDQ GQERYIQVRG APNRWTSVSI
121 DGIPMVGVDE GGDTRAFRFD AIPAVLLSQM VINKSLTSDL QADAVVATID LRTYSPMDRK
181 GLHVSGDLGY GQMSLGGGEQ RQGSLRLSWS NDNFGVVIGG SHYRRKQLTD NREVGAYDAK
241 GPTEFDIRQY EIERWNNGLF GGVEFDPGNG LRLYAKAIFS EFNDNEQRNQ YEFRLDRATG
301 GTRTQDSGSL TGVPLRGSFN FGEYRNRNYI GTIGGDYDTG DGLTASLKLN YTKTENTSYL
361 PLVQASTSGA NNLSLSYDNS NPNFPIVTIN GTFNQASMTS AGAYMIAARQ KTVSDSYTAK
421 LDVAKEMGDL TLSAGALYAD RDIDGTLFST SNLAMIGAQG AAVGQPFDIN SYVTNRPWDT
481 GFPLGVTFNY MDNVAMRRDI DTLLVRMQAA GLYNPALDTP ASDRYAQREK TLAGYVMGKV
541 ESGALTAVGG IRVERYSMDN RGTVIAGGVA TPLSYDRTKT DIFPSLNLKY AATDNLVLRL
601 AGQRGVSRPA YGAIRVGASI NDTNSPGTIG GGNPMLRPEY TWGADASIEY YLPGNGMISV
661 AAFHRWVDNV LYQSQAVVGT DFYNFGGVDR SGYLLSGTYN GESGKLYGVE FNLLKQFDFL
721 PGALDGLGFQ GNVTLLDGSF DTPTEKDIAF QGMSKTIANA SIFYEKYGIS ARVSYQWRSH
781 WLDTLGGLGS GEYRQGYENL DVSLRYALTD NLTLFADLAN LTDETYIAYQ GTPATPTEVE
841 QIGARYLFGV RFSF
//