LOCUS BAK65121.1 820 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-446
PROTEIN_ID BAK65121.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_04460"
/transl_table=11
BEGIN
1 MTRSGLLRLG VVALVCAGAP VCAQASESRR IDVPAGPLAQ SVPQLARQSG VSISVTSHEL
61 WQTKVRGVRG RLTAGEALAR MLSGTRSRAV QLSATSWRIE AMAAPLAARD APPPKRRVPE
121 QPLPTVSDDE TPIIVTASKM DQNYQDFPGT AHVMNGQDLG FGGERGTESI LSRMASVAST
181 HLGSGRNKLF IRGVADSSFT GPTQATVGQY LGDLRLSYNA PDPDLRLHDI KQVEVLEGSQ
241 GTLYGAGSLG GIIRLVPNDP DPRAFSLETM AGVSATWHGE PGGDIAATVN MPLGESGHAL
301 RVTGYGLSDG GYIDNPLRGA ENVNRTRIGG GRAALRLEAG DGWTVDVGGI YQTTTIDDSQ
361 YADRDGPPLS RASAVVEDAD ADYGMAMVVV RKAWGDLLFQ SSNAWVSHGL GERFDASSST
421 EKPSVFDQRN RTRMWVSENR LWRPVTDGVG WVIGASFIDN RTEQRRAFVE GGERRPITGV
481 TNRVTEVTAY GKLSLELKPG LLLSGGGRLT HSRLGGEGED VQPLFVATGR SITAERTETE
541 LLPSIELLAH VMPGVTLYSR FEEGFRPGGL AIETHFVRRF RNDHVESWEA GARFGSPRDG
601 IAANLSLTHV YWRDIQADFI DGSGLPSTAN IGNGRITSVA ASVALAPTRD LRIDLSAVYN
661 HSRVIALTPE VARLAASAPL RLPVTGSSFG LPLQGTLGTF EPEARLGRIP NVADYAIQAS
721 FDYRMPVGRD DLRVGGWLKY IGPSRLGIGP VLGDEQGDYV DTGFAARLGD AWRGVTLSLT
781 NLLDTQGNRF ALGTPFDIET GGFITPQRPR TIRLAFDWRY
//