LOCUS BAK65113.1 747 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-438
PROTEIN_ID BAK65113.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_04380"
/transl_table=11
BEGIN
1 MPRRGPGAIR FATAAGFALA SALCATDAMA QDNDGLYLLN RLNRIVVTAT RTPVRIEDSP
61 VTVSIIDEEQ MADELVTDIR DLIRFEPGVS VQRQPARFNA ALSATGRTGN DSFNIRGIGG
121 NRVLIQVDGV RVPDGFSFGA QAAGRGDYVD LGLIKSVEIL RGPSSALYGS DGLAGAVSFI
181 TADPADFLEG SAPVGGLVRA AYSSADNEFS ETAILAGRAG DWSAMAAYTR RDFNELKNKG
241 SVGGTGAART EPNPQDGHSN ALLGRIVYAP GGSGHKIRLT GEYLDTWLFT NGLTGLSSTV
301 ELLHGRDTGE RKRVALDWSW TGTGAITAAR AAIYWQDGLD SQFTDEDRTP AVDRERLNTF
361 ENRVIGAAAD AQSEFATGAL SHRLVFGGDV SKTRQRGLRD GTVPPAGETF PTRAFPSTDF
421 TRGGLFVGDE ISIADGLFTL YPALRFDFYD LSPDDDPLLP TFAGAAQDGS RLSPKLGAVL
481 KLDKGIRLFA NYATGFKAPE PGQVNQFFEN LAFGYKSEPN PDLKPERSES LEGGVRFASR
541 NVNLDLTAFS SIYHDFISQE VVGGGFTPSD PAIYQFINLS RVKVKGAEAR AEFRAQSGLH
601 GTLAFSYATG DVDGSGLTDL PLTTIDPIKL VVGVGYRDPG GLFGGQIIAT HSARKSEDRT
661 TGTDVDGSAT TICSGAPCYR PGAFTILDAT LFVKPMDGLT LRAGIFNILD KKYAWWSDVR
721 GLSASSTVTD AYTQPGRNAS LSLSYRF
//