LOCUS BAK65097.1 3303 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 putative autotransporter YapH protein.
ACCESSION AP012222-422
PROTEIN_ID BAK65097.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingomonadaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194, 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_04220"
/transl_table=11
BEGIN
1 MQVEDRTKNS TVRKSLKAGF FTSVGLAGLL AGAPAWAEPS VCETTGDVMF FNCGTSITYR
61 AESGETSLTV TGAELTDGTI NYNANANAEG PLTSTLTVTD SIVNATDYGG INMFSANEGG
121 NTVTISLGED VSITSSAGFA GVWVRNEVGG DIDITSAAEL NVSGTDTNGI SATTNSGSVH
181 INNSGDITVA ETLNPADYTQ RGIYADGGYT NVEPVEVEVI NSGKVSAQAA GIRVVNYNGL
241 ARIENSGEVS SVNNQGLVAW TPNGEVEVVN SAQGSATSLS GPAIQGASQI GDISIANDGS
301 AEGVSGILAI AGFDSGQPGG GSITISNSGA VTATGGIGVS ARTPDGDVSF TNTGTISAVS
361 AGVDLDTIDG TVLITNSGTI EGYHGIVTND AATRIVNSGT IATNGNGSAI VMGSGDVTLE
421 LHAGSAISGL VQDADPVNGT NTLVLGGADN ASFNAGSIGA DAQYRDFDAF VKAGDSIWTL
481 NGEGTTGWTV EAGTLTADTG GAFGVDQAYV VNGGTLDFAG TTASIASVTG TSEGSVNIGA
541 GGGLTLNQGT DGTYAGQITG SGKLTKAGSG TLTLTGDSSS FSGNLFLTGG ETVLDGNSMA
601 AGIVFLGSTD EPMLTVQNGG VLNAANVIVG NSTNSYAPYL ADESGSLSVT GSGSAVNADF
661 LTVGYYGDGA LSISGGGTVT TSTVITVGSV ADSAGTITIS GENSRLQGGN LQLAGSGTAV
721 LSVSEGATIE TSFGGLGVNA GSIGTATISG ANTRWDITQS GLAIATSGQG QVSVLDGATV
781 AASSGDIRLG AAAGGQGSLT VSGMGSSVST TENFIVGSYG TGNVTVDDGG QIQGDKLIVG
841 FVDGGAGTLN LSGAGTQVQG NTYIMVGTYA GSSGTVTLSD GATLKADGTR GITLAFEAGS
901 AGTLNIGAAA GEDAAAAGSI EAEYGIQFGN GTGNLVLNHN EAGYELATGL SGAGVINILA
961 GETIFSGNGS AFSGTLDISG GSFEVTSTLG ADHVSVGGVE SAHLSVVQGG VLESNTGSIG
1021 MGGTNGSVTI DGAGSSWVSS GGIQISRDGG STGSLAITDG GSFETVLGGL YMGAGGSISV
1081 SGEGSSLLIG TLHSELPASW NDADGWFSVD EGTVSITDGA LLATDGSYIG GSGTTVATMT
1141 VDGENTVWSN GIPLFIGGTG NGTVGHGDVT VSGGATVTSY TSALGVDTGS SGKLTLTGEG
1201 TTYTVLGREG FAGNMRVGYD GTGTVTVSNG ALLAATALVD VASQSGSEGT LVIENGGHVT
1261 GQSMRIGGQT ETVGSVTVDG AGSTLVIGSG RIGVGISGDG TLTVSNGGSA SSEGAVIGWE
1321 AGGKGTVNVT GAGSTFSNDG SLYVGNVGEG TLNISDGGRV TSTDGYVGTV AGSKGVVTVS
1381 GPESIWDMSG VFIVGNEATA RAEATISDGG TLRAVQGTLG NLNSSFGRMT VTGAGSTWSA
1441 YDDGITNWAG YLNVGLSGSG LLNVWDGGTV DAVRLYIGND AGSSGTVLLT GAGSTIRTEQ
1501 GLYVGAEGTG ELTLMNGAHI EAQTIKVGYL AGSTGTLIIG GLASQPAAAA GTINADEIHL
1561 GSGNSRLVLN HTSTDYELGA NLTGFGDVDV FAGTTVLSGD NSTFAGSLAI DGGRLILASA
1621 TNAVSTSIGT EGTLQIGNGG TSGSLNADIV NNGSLVFDRS DALHHNRVIS GTGDLTVAGG
1681 VITLSGMNTF TGATIIDTGA TLALSNQGRI NQSSLVTVNG TFDVTEGSAP RIKDIAGNGT
1741 VVLGNAGLQI DNASHVFSGS ITGEGGLNLN GGILILTGAS DFTNGLGISN GAVVHIGNGG
1801 TSGSITSGTT NYGTLVFDRS DEWTYGGAIT GQGEIIHAGS GTTNLTGGMG GSHFIIENGT
1861 VNMSGGLVAL LGEGAGISVE GQTSVLNVSN VGARANHTVY RVSDGGSLAI NGGSVRVGTA
1921 AGSAGVHLVS GSASVTGTSF DVKGASTYGV IVEAGNTLTL ADSSIKTIGN SAIGALARDG
1981 GVLDISGSTV QTTGTDAYAA YAANGGRITL ANSTISTSGM VADALVSDGE GSLISATNTT
2041 IETTGTQTAA VVARNNGAID LNGGSVSATV NEESPAAVWA LLAKDGGSIT ATDVNLSLTM
2101 LDNSAYVTGV AYAMDEGSSI TITGGTATAT GKRANGIFAY NSGSVSAEGL TISTSGEQAR
2161 GVYANADSNA AGSVTLKDAS ISANGTSSHG LFAERDSGST GNQIATITGE NVNITTSGDQ
2221 ANGIYAAVGG VITVTGGSVT TTGYQSMALA ASGSESGMTG GGILTVSDVT AHTLGNSAAG
2281 ANVYTAGQIV ANNITILTEG SSAQGIVVAA GIGTFANSTI ATTGNSSTGT LVRYQGQLTL
2341 TNSAITTSGA QSAGVTVGGN SQAQLTDSSV ATSGEGARGL FASTGLISVT GGSVTTSGAG
2401 SDGLNTRGNG AISLTGTEIT VRDASSAGAS IEDNGIIDMT AGSIRSAGST LAATSTDDSL
2461 ARFSFAGTDL ASDSGALLSV AHGPGEGTGI VGLLLTDGST AKGDIAGTGE GILDVLVSAS
2521 SLEGGLSNIT KLTLDNADWT VTSLAGLGEL EIATGTATIS TTGTVSHDGA LTGSGTFNKT
2581 GTGQFILAGN GSDFAGATQI DAGSMLLTGS LAGSLRINAQ GTMIVGDGVT SGDLIASTVN
2641 DGTLIFNQLG DYDYAGALSG SGGLVKRGSG TLLLSGDYGY TGSTVVEGGK IRLLAQLDSA
2701 TDLVINDGEF DLSGTDQTVA GLSGTGGTLN IGTSTLTVNQ TENTAFGGVF QGGGMIVMQG
2761 PQAGLPPTIY LTGQSFSGFN GDLWLQEIVA RVNGSLGGTI TVGEDAGLGG AGRVDNIVVT
2821 AGGTLMPGNS IGTLTASGNV VFETGSVYEV EVNADGESDK LLVGGTATIE GGTVSVLTAA
2881 GNYRFSSDYV IISAAGGVTG TFDDTDVDLP FLTPYLSYDP NNVTLTLVRN DRTFASVAAT
2941 SNQIAVASAL DASDQEASLP RAVAGQIEEE GAVRAFDALS GEIWATTGTL MIDRSRRMGD
3001 MVIGRLDQAD SLSASLASAR SAARQTRDGQ TAVWGQGIGT WNMLKSNGNA VKATQSSFGF
3061 ITGLDTMLGD WRLGVAVSQS EDKVRVDGRS SEATVKGTSV AAYAGGGWGP LRTRIGASYS
3121 WLDVDGSRKV VFPGVNDALS GSYDARSVTA FGEVSLAFAM GGASIEPFAG VNHVHLKSDA
3181 FAESGSALTA LGVEESTRSV TYTTLGLRLG SVMPISESAV LAPRVSAAWL RSFGDTDATS
3241 RHILPTGQAF SIAGLPTTRD TLRIEGGLQA NILPGGSIGA TYVGNIGDQW KDHGVKLGFS
3301 YSF
//