LOCUS BAK64900.1 990 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-225
PROTEIN_ID BAK64900.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_02250"
/transl_table=11
BEGIN
1 MCAAAPAQAQ DNIAPQAASE GEDGAAILVT GTRIKRDGFN EPTPATVIGA DLMANLGQVN
61 ISETLRVIPQ NSNFQSDATA GITAGANVGA SFANLRGLNP FNGTRTLTLV NSRRFIPTSD
121 GGAIDLNVIP SAMIQRVETV TGGASAAYGS DAIAGVVNII LDTRFEGIKA QADYGQTTRG
181 DGKSYHASLM GGTSFGGGRG HIVAGIEYQK NEGVGDCAKV RLWCAESYDI FTNANSILPG
241 TTARTGYNIP GSPTYGLPHY IIAPGSKQAF NDPRGVVRDA TVTNPAARYK RFNDEGTGVV
301 DFDAGRFLGA ALIGPRQGGD GASTYDDSDL QTPLKRWVGY MYGEYELTDT LTLQTELTYA
361 QRIASNTSYI VGPRSTFYVQ PDNPYLPNDL KALLAGTRFS LGKDLDGVLT SENRADARVF
421 RGLIGLSGPL FGDWTWDAYY QYGRNKRHQD RTNNRVNQPF QYALDAVDEG LVTTGVASGN
481 IVCRELTRAN PDPRAQGCKP MNLFGLGNVD PAALAYAYRP VVEDFIYDQH VLSGSVQGTV
541 FEGWGAGPIA AAAGVDWRSE GGDVTHGNIP DYNDYAFTFG LDYSGQINVL EGFGELNVPI
601 FRDSAIGDLL ELNGAARYTR NHARNNDSRE EKTSEAVSWK VSAVYDIIPD IRIRASRSRD
661 IRAAGFRELF LRNVPTEPGS TSGIVNNWWL DPVGQQTGND WTPILNGGSF ALTPEKADTT
721 TLGVVLQPSF IPGLRVSADW YQIKIKDAVT TLTGQRIVDF CFDYELFCDR INFATADRKD
781 VSFIDARQVN LAKMVLRGFD FEVDYRMRLS DVRSDWNGAV SFRLLANRQY DFISQANPSV
841 PEINYAGQTG PVVDGGDFNP SPPWIWNAFV TYDNGGFNTT FSWRRYSEGI FNVLRTGPED
901 EGYDPTQANS ISTNRVKGAS YFNLAMTYRI PMGSSDTRFV ELFGTVDNLF DRKPPVAPGG
961 GGGAGSNYPT NPVFFDTFGS RWRAGIRVRY
//