LOCUS       BAD61713.1               755 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative 1,4-alpha-glucan
            branching enzyme I precursor protein.
ACCESSION   AP003685-27
PROTEIN_ID  BAD61713.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 138037)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2001)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC
            clone:P0548E04
  JOURNAL   Published Only in Database(2001)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from T7 to SP6 of the PAC
            clone. This sequence of P0548E04 clone has an overlap with
            P0535F09 (DDBJ: AP007231) clone at 5' end and with P0017G10 (DDBJ:
            AP004685) at 3' end.  Detailed information on overlap and assembly
            quality together with annotation of this entry is available at
            http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="6"
                     /clone="P0548E04"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0548E04.28-2"
                     /note="contains full-length cDNA(s): AK065121"
     intron_pos      54:1 (1/11)
     intron_pos      77:2 (2/11)
     intron_pos      167:2 (3/11)
     intron_pos      470:0 (4/11)
     intron_pos      509:0 (5/11)
     intron_pos      530:0 (6/11)
     intron_pos      566:0 (7/11)
     intron_pos      600:0 (8/11)
     intron_pos      622:2 (9/11)
     intron_pos      650:0 (10/11)
     intron_pos      689:0 (11/11)
BEGIN
        1 MVTVVEEVDH LPIYDLDPKL EEFKDHFNYR IKRYLDQKCL IEKHEGGLEE FSKGYLKFGI
       61 NTVDGATIYR EWAPAAQEAQ LIGEFNNWNG AKHKMEKDKF GIWSIKISHV NGKPAIPHNS
      121 KVKFRFRHGG GAWVDRIPAW IRYATFDASK FGAPYDGVHW DPPACERYVF KHPRPPKPDA
      181 PRIYEAHVGM SGEEPEVSTY REFADNVLPR IRANNYNTVQ LMAIMEHSYY ASFGYHVTNF
      241 FAVSSRSGTP EDLKYLVDKA HSLGLRVLMD VVHSHASNNV TDGLNGYDVG QNTHESYFHT
      301 GDRGYHKLWD SRLFNYANWE VLRFLLSNLR YWMDEFMFDG FRFDGVTSML YHHHGINKGF
      361 TGNYKEYFSL DTDVDAIVYM MLANHLMHKL LPEATIVAED VSGMPVLCRP VDEGGVGFDF
      421 RLAMAIPDRW IDYLKNKEDR KWSMSEIVQT LTNRRYTEKC IAYAESHDQS IVGDKTIAFL
      481 LMDKEMYTGM SDLQPASPTI NRGIALQKMI HFITMALGGD GYLNFMGNEF GHPEWIDFPR
      541 EGNNWSYDKC RRQWSLVDTD HLRYKYMNAF DQAMNALEEE FSFLSSSKQI VSDMNEKDKV
      601 IVFERGDLVF VFNFHPNKTY KGYKVGCDLP GKYRVALDSD ALVFGGHGRV GHDVDHFTSP
      661 EGMPGVPETN FNNRPNSFKV LSPPRTCVAY YRVDEDREEL RRGGAVASGK IVTEYIDVEA
      721 TSGETISGGW KGSEKDDCGK KGMKFVFRSS DEDCK
//