LOCUS BAD46268.1 218 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group harpin-induced family protein-
like protein.
ACCESSION AP005567-12
PROTEIN_ID BAD46268.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 124028)
AUTHORS Sasaki,T., Matsumoto,T., Hattori,M., Sakaki,Y. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T., Hattori,M., Sakaki,Y. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC
clone:OJ1254_E07
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from -21M13 to M13rev of the
BAC clone. This sequence of OJ1254_E07 has an overlap with
OJ1531_B07(DDBJ: AP005682) clone at 5' end and with P0515E01(DDBJ:
AP005314) clone at 3' end. The sequence was generated by combining
Monsanto and RGP-Japan sequencing data. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="9"
/clone="OJ1254_E07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OJ1254_E07.26"
BEGIN
1 MDVSRKARFC EAHHRARRFR HLATAALAVA ALAAAAAAAL VLYLVYRPVM PQASVPRAAV
61 YRLALANASS SAHALAASVQ FTLVLHNPSD RASLLYDGLV AYASYRGEPV MPPAPLPPVA
121 QDRGADVAMS PLLGGAAVPV SPDAARALAA DCAARRVQLR LVVMGRVKYR SGPFRSGWRD
181 LYVRCNVVVG LSTEAAVAGG GGGGDVPLLE YPRCAVDA
//