LOCUS BAD38563.1 416 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group unknown protein protein.
ACCESSION AP006850-6
PROTEIN_ID BAD38563.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 34833)
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2004)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, fosmid
clone:OSJNOa257A21
JOURNAL Published Only in Database(2004)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
fosmid clone. This sequence of OSJNOa257A21 clone has an overlap
with P0461D06(DDBJ: AP005845) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OSJNOa257A21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNOa257A21.14"
/note="contains EST(s): AU056674(S20777),AU056673(S20777)"
/note="contains full-length cDNA(s): AK103390"
/note="similar to Arabidopsis thaliana chromosome3,
At3g26670"
intron_pos 32:0 (1/12)
intron_pos 61:1 (2/12)
intron_pos 82:0 (3/12)
intron_pos 110:2 (4/12)
intron_pos 135:1 (5/12)
intron_pos 169:2 (6/12)
intron_pos 212:2 (7/12)
intron_pos 246:0 (8/12)
intron_pos 286:0 (9/12)
intron_pos 316:1 (10/12)
intron_pos 330:2 (11/12)
intron_pos 364:0 (12/12)
BEGIN
1 MGDWVIGALI NIVGSVAINF GTNLLKLGHD QREKLSTTNN NQGNDKFVPK SVMHFQTWRI
61 GILFFAAGNC LNFMSFAYAA QSLLAALGSI QFVSNIAFAY FVLNKTISVK VMVATTFIVF
121 GNIFLVSFGN HQSPVYTPEQ LVAKYSNLVF VLYCMSLVFV VAFNQYLYRS GETIISDSAK
181 HTGSHWRTLL PFSYAIVSGA IGSCSVLFAK SLSNMLRLTM SSRYQFHSWF TYSMLLLFLF
241 TAGFWMARLN EGLSLFDAIL IVPMFQIAWT FFSICTGFVY FQEYQVFDTL RIVMFVLGMT
301 SVFIGISLLA PDDSKDGSSA TQEPAIDANR PGKMQTEETE VDGTNSFTSS VKVKAKRILS
361 KAKSACSMSL GLGEETISAS SVLAMPMVSS RTTGFRGIAT DRSKYIPLRS TDWDNL
//