LOCUS BAD27804.1 603 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group erythrocyte binding protein-
like protein.
ACCESSION AP004156-12
PROTEIN_ID BAD27804.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 149119)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2001)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
clone:OJ1112_G07
JOURNAL Published Only in Database(2001)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from -21M13 to M13rev of the
BAC clone. This sequence of OJ1112_G07 clone has an overlap with
B1136H02 clone (DDBJ: AP005798) at 5' end and an overlap with
P0508B05 (DDBJ: AP004753) at 3' end. The sequence was generated by
combining Monsanto and RGP-Japan sequencing data. Detailed
information on overlap and assembly quality together with
annotation of this entry is available at
http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OJ1112_G07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OJ1112_G07.16"
intron_pos 152:0 (1/2)
intron_pos 598:1 (2/2)
BEGIN
1 MAGLIPPFSR FFHEVLDFYE IHALHLAPNS VMTLAIFAHL CEMFVGVRPT MRLFQSFFVP
61 QLLQGAVVGG CYFQPRPGTA GQYIESHLRK KWEDWKKDWF YTALPNHPQL RLTGRPERSA
121 AWLAVSELGE EYDAVRDHLR GLRSQGLTGA MGRRAVDDMV EVGCKMRQAQ LAEIQACEET
181 LDSVMREMEE ERQAALIASS ILDEALGDIR LQYEAHAEDL AKRVENARGV LVAAAAQERR
241 ASEADASLRA RTAALEAERK ALDERARSAQ EFEATIRRCI EVLDRNQREQ DARSRDQAQR
301 AQELEGRAQA LEERAHLLDQ QESILAAHER TATEAEASLR LREEAAAERD RTTLAAKALA
361 ARRAEELWLW EEVCRERDAA LAEREAEVNR REVAAPAGRA TRETRGGRRR ARGSASGECS
421 RRARGDGGEG ASELEAREKD LAAGGQPGGA ELVSQLTAAQ STLADLGRLV QDQAGEIAAL
481 RLTHEIGPGQ LSDAIDWLER AGHRVGIFVR RDRKLPPTQP ALVIRLDGLA ADLERLEEEV
541 GEIVKSSLAS LARAAVELVL ASHQARHPDF VPWRALEDFP PGTEARARVQ VRGLGRRVNT
601 SYL
//