LOCUS BAD25900.1 329 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group WD-40 repeat protein-like protein.
ACCESSION AP005513-27
PROTEIN_ID BAD25900.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 157627)
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
clone:OSJNBa0014E22
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OSJNBa0014E22 clone has an overlap
with OJ1581_H09 (DDBJ: AP004067) clone at 5' end and with P0010C01
(DDBJ: AP004768) at 3' end. Detailed information on overlap and
assembly quality together with annotation of this entry is
available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OSJNBa0014E22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBa0014E22.36-2"
/note="contains full-length cDNA(s): AK103219"
intron_pos 25:1 (1/5)
intron_pos 78:0 (2/5)
intron_pos 95:1 (3/5)
intron_pos 123:0 (4/5)
intron_pos 154:1 (5/5)
BEGIN
1 MDKTVRLWHV SSTYCLKTFS HSDYVTCIQF NPVNDKYFIS GSLDKKVRIW SIQERKIVDW
61 IDLHEMITAA CYTPDGQGAL VGSHKGKCHV YDISDNMLKH KKQIDLHIKK RKSSQKKITG
121 IQFVPGSSSK VIITSADSRI RVIDSFELVC KFKGFRNTNS QISACSAVKG RYLISASEDS
181 HVYMWRCNDD SEPNTKKGIV SITNTHEHFH CEGVTVAVSW PCASSTMTSR EWPENGLSGS
241 ELDKDQEMPD AQHQSNIIRN TNPNHNGDTS ATWSEELMTP TKQSPRSSAS HPMEGDQAPS
301 HSAWGLVIVT AGHEGHIRTF QNFGFPVRV
//