LOCUS BAD25888.1 381 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative alcohol dehydrogenase protein.
ACCESSION AP005513-15
PROTEIN_ID BAD25888.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 157627)
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
clone:OSJNBa0014E22
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OSJNBa0014E22 clone has an overlap
with OJ1581_H09 (DDBJ: AP004067) clone at 5' end and with P0010C01
(DDBJ: AP004768) at 3' end. Detailed information on overlap and
assembly quality together with annotation of this entry is
available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OSJNBa0014E22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBa0014E22.22-1"
/note="contains EST(s): D39977(S1677)"
/note="contains full-length cDNA(s): AK073849"
intron_pos 15:1 (1/9)
intron_pos 61:0 (2/9)
intron_pos 76:2 (3/9)
intron_pos 184:1 (4/9)
intron_pos 212:0 (5/9)
intron_pos 237:1 (6/9)
intron_pos 258:0 (7/9)
intron_pos 290:0 (8/9)
intron_pos 344:0 (9/9)
BEGIN
1 MAAASSPAAA ITCRAAVAWA PGQALVMEEV EVAPPEAMEI RVKVVSTSIC RSDVTQWQST
61 AQTDLFPRIF GHEASGVVES VGEGVTEFEV GDHVLTVFIG ECMSCKHCVS GKSNMCQKLG
121 LERRGVMHSD QKTRFSLRGK PVYHYCAVSS FSEYTVVHSG CAVKVGPTVP MDRICLLSCG
181 VSAGLGAAWK VADISKGSSV VIFGLGTVGL SVAQGAKLRG ASIIIGVDTN PEKQEKGKAF
241 GVTDFINPEE LNEPVQQVVK RLTNGGADYS FECVGDTGVV STALQSCSDG WGLTVTLGVP
301 KAKPEVSAHY ALLLSGRTLK GSLFGGWRPK SDLPLLVDKY ANKEIQVDDL VTHDLSFDYI
361 NKALELMLEN KCLRCVIHMP Q
//