LOCUS       BAD25412.1               783 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative CTR1-like protein
            kinase protein.
ACCESSION   AP004777-12
PROTEIN_ID  BAD25412.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 144917)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2002)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
            clone:P0458B05
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from T7 to SP6 of the PAC
            clone. This sequence of P0458B05 clone has an overlap with
            P0415B12 clone (DDBJ: AP004772) at 5' end and an overlap with
            P0475F05 (DDBJ: AP004879) at 3' end.  Detailed information on
            overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="P0458B05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0458B05.27"
                     /note="contains EST(s): AU097359(S4184),D41591(S4184)"
     intron_pos      179:0 (1/15)
     intron_pos      278:2 (2/15)
     intron_pos      328:0 (3/15)
     intron_pos      362:2 (4/15)
     intron_pos      432:1 (5/15)
     intron_pos      484:2 (6/15)
     intron_pos      523:1 (7/15)
     intron_pos      537:0 (8/15)
     intron_pos      560:0 (9/15)
     intron_pos      593:2 (10/15)
     intron_pos      622:0 (11/15)
     intron_pos      655:0 (12/15)
     intron_pos      678:0 (13/15)
     intron_pos      722:0 (14/15)
     intron_pos      753:2 (15/15)
BEGIN
        1 MKADAKWPAM VLGGGGGGGR RASPGSAPPP AAPAAVAYSL LATSPPASIG NGGGSPHCDD
       61 GDASRGLGVA DWLRLQRHSS GSSAGDDGDG FSSVSTLATA DKGGDPADRP AGSSGGGGSK
      121 SWAQQAEEAY QLQLALALRL CSEASTAPDP NFLDSAVAAA DDHHRDAPSP QSLSHRFWVN
      181 GSLSYSDKVL DGFYLIHGMD PFVWTLCNDL RDGARVPSIE SLKAMNPTES SVEVVLIDRV
      241 VDYDLRQLIS TAIDVSRSRA DSREITTRLA GIVSSKMGGS VASTEEHELC PRWRDSAGFL
      301 KISSGSVVLP IGKLSIGLCR HRSLLFKTLA DTISLPCRVV RGCRYCKSAG AASCLVHFGN
      361 DREYLIDLIG NPGFLSEPDS LLNGLSSISV SSPLRPPKYN SADIVNNFKS LAKQYFLDCQ
      421 SLNMMFNDPA AVSGTVVDLD EAMGSNIGPN LSPATNSDFQ ANFSHRSRGA QSSGQDGNFL
      481 IQKSSPEDTQ SAQSDPFSDI SLDIEDLIIP WSELVLKEKI GAGSFGTVHR ADWNGSDVAV
      541 KILMEQDFHP ERLKEFLREV AIMKSLRHPN IVLFMGAVTQ PPKLSIVTEY LSRGSLYRIL
      601 HKHGARENLD EKRRLSMAFD VAKGMNYLHK RNPPIVHRDL KSPNLLVDKK YTVKVCDFGL
      661 SRLKANTFLS SKTAAGTPEW MAPEVIRDEP SNEKSDVYSF GVILWELMTL QQPWSTLNPA
      721 QVVAAVGFNG RRLEIPSSVD PKVAAIMESC WTKEPWRRPS FASIMESLKP LIRTPHQLQE
      781 DIS
//