LOCUS BAD25411.1 362 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group hypothetical protein protein.
ACCESSION AP004777-11
PROTEIN_ID BAD25411.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 144917)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
clone:P0458B05
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from T7 to SP6 of the PAC
clone. This sequence of P0458B05 clone has an overlap with
P0415B12 clone (DDBJ: AP004772) at 5' end and an overlap with
P0475F05 (DDBJ: AP004879) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="P0458B05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0458B05.26"
/note="predicted by FGENESH etc."
intron_pos 60:0 (1/2)
intron_pos 131:0 (2/2)
BEGIN
1 MALTVGHSAP AHLALRWDLA ATPKAQTSKP AGWLAGWDLS ASHNGADRGT LSASPPGAED
61 LSASHNGANC GKLSASPPGA EVGLGRFEPS GWLAGWDLSA IHNGADCGKL SASPPGAEVG
121 HLSAEAVGAE TRIPLLHPPS AHRLPSPPPI VRGASPPIPA TRCAAAPPLH LRATALALTF
181 ARPVAAPPPP RGRGAPPLSR ERDLVFGASA IPSWRTLGFV EYIPSGKKQG GMVLVVPEGS
241 YAVRLGNEAS IRQRLAGAAR GARYALTFSA ARTCAQAERL NVSASGQWAV LPMQTMYSSN
301 GWDSYAWTWD AAANVFDVVI HNPGVTEDPA CGSLIRNTVE NSFQIVIYKM WRQWLTENSN
361 SV
//