LOCUS       BAD25401.1               705 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative acetyl-CoA synthetase protein.
ACCESSION   AP004777-1
PROTEIN_ID  BAD25401.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 144917)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2002)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
            clone:P0458B05
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from T7 to SP6 of the PAC
            clone. This sequence of P0458B05 clone has an overlap with
            P0415B12 clone (DDBJ: AP004772) at 5' end and an overlap with
            P0475F05 (DDBJ: AP004879) at 3' end.  Detailed information on
            overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="P0458B05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0458B05.3"
                     /note="contains EST(s): AU075434(E60705),AU031062(E60705)"
                     /note="contains full-length cDNA(s):
                     AK066073,AK067696,AK060822"
     intron_pos      71:0 (1/17)
     intron_pos      120:0 (2/17)
     intron_pos      172:0 (3/17)
     intron_pos      213:0 (4/17)
     intron_pos      269:1 (5/17)
     intron_pos      297:0 (6/17)
     intron_pos      331:0 (7/17)
     intron_pos      360:2 (8/17)
     intron_pos      391:0 (9/17)
     intron_pos      429:0 (10/17)
     intron_pos      454:2 (11/17)
     intron_pos      481:0 (12/17)
     intron_pos      504:0 (13/17)
     intron_pos      562:2 (14/17)
     intron_pos      581:2 (15/17)
     intron_pos      612:0 (16/17)
     intron_pos      645:0 (17/17)
BEGIN
        1 MGTASGDQPA GASSDKLRHV ESMSELPSGA GRISGINAVV LGESLAAEEH DLVYPSAEFS
       61 ADALVPSPKK YQKMYERSIN DPAGFWSEIA DAFYWKEKWN PSEVCSENLD VTKGPVQISW
      121 FKGGKTNICY NAVDRNVEAG NGDKIAMYWE GNEPGQDGKL TYSELLDRVC QLANYLKSVG
      181 VGKGDAVIIY LPMLLELPIA MLACARIGAV HSVVFAGFSA DSLAQRIVDC KPKLVITCNA
      241 VKRGVKPILL KDIVDAGLAE SEKQGVAVGL CLTYENQSAM KREDTKWQAG RDVWWQDVVT
      301 SFPTKCDVEW VDAEDPLFLL YTSGSTGKPK GVLHTTGGYM VYSATTFKYA FDYKPSDIYW
      361 CTADCGWITG HSYVTYGPLL NGATVLVFEG TPNYPDSGRC WDIVDKYKVT IFYTAPTLVR
      421 SLMRDGTEYV TRHSRKSLRV LGSVGEPINP SAWRWFYNIV GDSRCPISDT WWQTETGGFM
      481 ITPLPGAWPQ KPGSATFPFF GVQPVIVDEK GKEIEGECSG YLCIKKSWPG AFRTLYGDHD
      541 RYETTYFKPF AGYYFTGDGC SRDKDGYHWL TGRVDDVINV SGHRIGTAEV ESALVSHPKC
      601 AEAAVVAVEH EVKGQGIYAF VTLVDGVPYS EELRKSLILT VRNQIGAFAA PDKIHWAPGL
      661 PKTRSGKIMR RILRKIASKQ LDELGDTSTL ADPGVVDQLI ALKDC
//