LOCUS       BAD23126.1               632 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative NAC2 protein.
ACCESSION   AP004878-30
PROTEIN_ID  BAD23126.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 139544)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2002)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
            clone:P0474F11
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from SP6 to T7 of the PAC
            clone. This sequence of P0474F11 clone has an overlap with
            OJ1202_E07 (DDBJ: AP004048) clone at 5' end and with OJ1119_A01
            (DDBJ: AP004020) at 3' end.  Detailed information on overlap and
            assembly quality together with annotation of this entry is
            available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="P0474F11"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0474F11.36"
                     /note="contains EST(s): C97477(C60247),C97476(C60247)"
                     /note="contains full-length cDNA(s): AK102173,AK062258"
     intron_pos      160:0 (1/4)
     intron_pos      237:0 (2/4)
     intron_pos      458:0 (3/4)
     intron_pos      494:1 (4/4)
BEGIN
        1 MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD
       61 LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR
      121 GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ
      181 YGAPYLEEDW EEEDDAIENM PASGAFAEMA AVTDTADEST EEDGNFSLKT NDEPLQTQEY
      241 QPEITPVKAQ GSNEETNGGG YSCDVFSLDE ILQEPENVCK NEEQNAIDDK FTIAELSGYP
      301 RQDDGYVGEN GPVNWIDPSN GDNTNWPLRA YSTQNHVNGT LSADGFFDTV NGTNSYSGPS
      361 DNQNLYLQDD GLTSSHQVGD NMPFYDASSN HKWVDGKDDY LNLNDLLYPP AENQPLFDAG
      421 DDLMAYFDAT EDDFKFDIMG TEDSNSQLPD MSNFVQKDDN NNKFTLDGIS NTALYGASSS
      481 GSHGNMYPDT AVPDMPMDDT VDKSFGKRLA SMLGSIPAPP AMASEFPPST GKSVVPLSAV
      541 NPSSSIRVTA GIIQLGGITF TGSTEHLQKN GDFNLLLSFT VEGDVSTKSI GFEPDTQMST
      601 TPMVLRSGMY LFFVSAMILM LSYKVGLCIY SR
//