LOCUS BAD23104.1 621 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group kinesin light chain-like protein.
ACCESSION AP004878-8
PROTEIN_ID BAD23104.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 139544)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
clone:P0474F11
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from SP6 to T7 of the PAC
clone. This sequence of P0474F11 clone has an overlap with
OJ1202_E07 (DDBJ: AP004048) clone at 5' end and with OJ1119_A01
(DDBJ: AP004020) at 3' end. Detailed information on overlap and
assembly quality together with annotation of this entry is
available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="P0474F11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0474F11.12"
/note="contains full-length cDNA(s): AK067708"
intron_pos 550:2 (1/1)
BEGIN
1 MALRRAASLL LRPRLRAPVP IPTPKTPNPL LLPPRRHFSQ LPPPPVPASA AAAAAAVAEE
61 AEEAFEAAKG TKDLLAAFSR LEAVMPPSDK RLALACIKLG QHLEASGAAD PSRVLALALR
121 SLGILEATPN SATSTTASHS DAVSLAMALH LAGSASFDLS RFHDALSFLT RSLRLVSPLL
181 PSSSSAAAAS GDDDAQGFDV RPVAHAVRLQ LANVKTALGR REEALADMRA CLDLKESILP
241 PGSRELGAAY RDLAEAYSTV LDFKEALPLC EKALELHQST LGKNSVEVAH DRRLLGVIYT
301 GLEQHEQALQ QNEMSQKVMK SWGVAGDELL HAEIDAANIK IALGKCDEAV TVLRNVSKQV
361 EKDSEIRALV FISMAKALAN QEKAGDTKRC LEIACDILEK KELAAPDKVA EAYVEVSSLY
421 EMVNEFDKAI SLLKRSLGML ERIPQAQHME GNVAARIGWL LLLTGKVSEA VPYLEDAVER
481 MKDSFGPKHY GVGYVYNNLG AAYMEIGRPQ SAAQMFALAK EVMDVSLGPH HSDTIEACQS
541 LANAYNAMGS YALAMEFQKR VVDSWRNHGP SARDELKEAI RLYEQIKIKA LSCLSPENSA
601 IALPEPLEKE VDSDSTRVAQ Q
//