LOCUS BAD21878.1 953 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative O-linked N-acetyl
glucosamine transferase protein.
ACCESSION AP004864-4
PROTEIN_ID BAD21878.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 159891)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
clone:OSJNBa0048K16
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OSJNBa0048K16 clone has an overlap
with P0483C08 clone (DDBJ: AP004837) at 5' end and an overlap with
P0579G08 (DDBJ: AP005317) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OSJNBa0048K16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBa0048K16.5"
/note="contains EST(s): AU031805(R1843),D24403(R1843)"
intron_pos 75:1 (1/26)
intron_pos 125:0 (2/26)
intron_pos 158:0 (3/26)
intron_pos 175:0 (4/26)
intron_pos 214:0 (5/26)
intron_pos 233:0 (6/26)
intron_pos 273:0 (7/26)
intron_pos 294:0 (8/26)
intron_pos 320:1 (9/26)
intron_pos 357:0 (10/26)
intron_pos 375:0 (11/26)
intron_pos 397:2 (12/26)
intron_pos 432:0 (13/26)
intron_pos 499:2 (14/26)
intron_pos 532:0 (15/26)
intron_pos 556:0 (16/26)
intron_pos 581:2 (17/26)
intron_pos 620:2 (18/26)
intron_pos 649:0 (19/26)
intron_pos 705:0 (20/26)
intron_pos 742:0 (21/26)
intron_pos 771:0 (22/26)
intron_pos 813:2 (23/26)
intron_pos 841:1 (24/26)
intron_pos 876:2 (25/26)
intron_pos 917:0 (26/26)
BEGIN
1 MLSLQQQGGG DPRPQQPAAA PALLGGADWL GFGRAAAELD ESVASSPASF LLPPAPPVDA
61 RAQAQPEPKP KQLGAVDVER HLALAHQNYR SGKYKEALEH GNIVYEKNPR RTDNLLLLGA
121 IYYQIRNYDM CIAKNEEALA IDPNFAECYG NMANAWKEKG DVDLAIRYYL TAIQLRPNFC
181 DAWSNLASAY TWKGRLNEAA QCCRQALAIN PRLVDAHSNL GNLMKAQGFI QEAYNCYIEA
241 LRIDPQFAIA WSNLAGLFME AGDLDKALLY YKEAVKLKPS FADAYLNQGN VYKTMGMSQE
301 AIISYQRAVQ ARPDYAMAYG NLATIYYEQG QLDIAIRCYN QAIICDPQFV EAYNNMGNAL
361 KDAGRVEEAI NCYRSCLALQ ANHPQALTNL GNIYMEWNLI SAAASFYKAA ISVTSGLSSP
421 LNNLAVIYKQ QGNYADAITC YTEVLRVDPT AADALVNRGN TFKEIGRVNE AIQDYIQAAT
481 IRPTMAEAHA NLASAYKDSG HVETAIVSYK QALRLRPDFP EATCNLLHTL QCVCDWENRN
541 AMFRDVEEII RKQIKMSVLP SVQPFHAIAY PIDPMLALEI SCKYAAHCSL IASRFGLPSF
601 VHPPPVPVKA EGKHCRLRVG YVSSDFGNHP LSHLMGSVFG MHDRDNVEVF CYALSQNDGT
661 EWRQRIQSEA EHFVDVSAMT SDMIARIINQ DKIQILINLN GYTKGARNEI FALQPAPIQV
721 SYMGFPGTTG AAYIDYLVTD EFVSPTCYSH IYSEKLVHLP HCYFVNDYKQ KNRDCLDPVC
781 PHKRSDYGLP EDKFIFACFN QLYKMDPEIF DTWCNILKRV PNSALWLLRF PAAGETRVRA
841 HAAARGVRPD QIIFTDVAMK NEHIRRSSLA DLFLDTMKEY EDRAVDLALN PAKLQALTNK
901 LKEVRMTCPL FDTARWVRNL ERAYYKMWNL YCSGRHREPF KVIEDDNEFP YDR
//