LOCUS BAC83913.1 606 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative pectin-glucuronyltransferase
protein.
ACCESSION AP005179-14
PROTEIN_ID BAC83913.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 127992)
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (15-MAY-2002)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC
clone:OSJNBb0084L07
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OSJNBb0084L07 clone has an overlap
with P0506C07 (DDBJ: AP004384) clone at 5' end and with
OSJNBb0002L09 (DDBJ: AP005877) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="7"
/clone="OSJNBb0084L07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBb0084L07.20-1"
/note="contains full-length cDNA(s): AK073755"
intron_pos 189:0 (1/3)
intron_pos 263:2 (2/3)
intron_pos 380:0 (3/3)
BEGIN
1 MRASSFSSLM LPCSHGHGGG RATASTCAAA AAACLALVAL VILVVSMDPR AQASSWFFLS
61 SSSSSSSSSS STLVRPAASS HAASLRKPSS WGGGNGGGGG GEHLLVTSSS FGSGGGARGS
121 WSRNSTSKEV LFQGGGGGGG DEMTSTAAAP TPALIIGSSS GDGVSPSRVA VTAAAAEPTP
181 ALAPAPAPEW GVGDAASGDD IIQVMPQAQR RRDVKLELLE LGLAKARATI REAIQNKDNK
241 PPLTDKDYVP VGPVYRNAYA FHRSYLEMEK VFKVFVYEEG EPPVFHDGPC RSIYSTEGRF
301 IYAMEMENRM RTRDPDQAHV FFLPFSVVKM VKMIYEPNSH DMDPLRRTIS DYINVVSTKY
361 PHWNRSLGAD HFMLSCHDWG PYVSSANGHL FSNSIRVLCN ANTSEGFDPS RDVSLPEINL
421 RSDVVDRQVG GPSASHRPIL AFFAGGDHGP VRPLLLQHWG KGQDADIQVS EYLPRRHGMS
481 YTDMMRRSRF CLCPSGYEVA SPRVVEAIYL ECVPVVIGDD YTLPFADVLN WAAFSVRVAV
541 GDIPRLKEIL AAVSPRQYIR MQRRVRAVRR HFMVSDGAPR RFDVFHMILH SIWLRRLNVR
601 VIARED
//