LOCUS BAB92424.1 630 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative diphosphonucleotide
phosphatase 1 protein.
ACCESSION AP003293-24
PROTEIN_ID BAB92424.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 166497)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2001)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T.,
Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y.,
Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K.,
Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K.,
Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y.,
Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T.,
Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W.,
Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K.,
Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H.,
Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N.,
Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M.,
Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K.,
Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S.,
Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H.,
Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.
TITLE The genome sequence and structure of rice chromosome 1
JOURNAL Nature 420, 312-316 (2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from SP6 to T7 of the PAC
clone. This sequence of P0691E06 clone has an overlap with
P0699H05 (DDBJ: AP003299) clone at 5' end and an overlap with
P0003D09 (DDBJ: AP003221) clone at 3' end. Detailed information
on overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="1"
/clone="P0691E06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0691E06.40-1"
/note="contains EST(s):
AU056108(S20293),AU056109(S20293),AU056884(S20951)"
/note="contains full-length cDNA(s): AK066643"
intron_pos 101:2 (1/12)
intron_pos 131:0 (2/12)
intron_pos 221:0 (3/12)
intron_pos 257:1 (4/12)
intron_pos 296:2 (5/12)
intron_pos 341:0 (6/12)
intron_pos 403:2 (7/12)
intron_pos 466:0 (8/12)
intron_pos 488:2 (9/12)
intron_pos 520:0 (10/12)
intron_pos 584:0 (11/12)
intron_pos 611:0 (12/12)
BEGIN
1 MARLLLLLVL IGGICAAAAA SSPLLPAAET MRVSFAGKSE FRTVNRKPLG TCLDPSPYLE
61 ISVSTGGAPL PDEAFLNVTV SGVRRPDRSH WLAMITPSNS SVLGCPLNGV NYIETGDLAS
121 LPLLCHYPVK AQYLTSDPGY LGCKASACQK RRASGTCKVR TCAATLAFHV INFRTDVEFV
181 LFSGGFATPC VLKRSGALPF ANPAKPLHGH LSSVDSKATS MRLTWVSGDA RPQQVQYGTG
241 KTATSVATTF THKDMCSIAV LPSPAKDFGW HDPGYIHSAL MTGLQPSQSY NYRYGSDSVG
301 WSNTTEFRTP PAAGSGELSF VIFGDMGKAP LDPSVEHYIQ PGSTSVAKAV AAEMQTGKVD
361 SIFHIGDISY ATGFLVEWDF FLHLITPLAS QVSYMTAIGN HERDYAGSGS VYPTPDSGGE
421 CGVPYESYFP MPASGRDKPW YSIEQGSVHF VVMSTEHEWS EKSDQYNWME MDLSSVDRSR
481 TPWVIFIGHR PMYSSSSGIP PSVDPNFVSS VEPLLLNHKV DLVFFGHVHN YERTCAVYQG
541 NCKGMPKKDA KGVDTYDNSN YAAPVHAVVG AGGFNLDGFP KIGLHSWSLS RISEFGYARV
601 HATKTDMLVQ FVNSNTSAVQ DQFRIVKGAR
//