LOCUS AMU96662.1 900 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 conjugal
transfer protein TraG protein.
ACCESSION CP013342-3698
PROTEIN_ID AMU96662.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_18850"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_007013881.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MVEIFTVGGG DYLVNVFQAV AAWTGNGGYK SLLQVVMVMG LGLSAITLAF NQDWRAWINW
61 FLGATLIYSC LMVPRLDVHV TDRLNPSLAP ANVSNVPLGL ALMASFTSQV GDYLTGSAEV
121 VFGLPGDLNY SKNGMIYGAR LYDATRSLRI SDPEFAANLD EHFRQCVFYD VLLGRYSMKE
181 LAETSDIWTT IAPGSQARAQ RFLTRDTGTG QVTSNIITCR EAYDALNGQW AGLIDGMGTV
241 FGRQLYPNQT AALAKAKLFA DLPVAYQYLT GVSANATEIF KQTLTINAMS QAMHSMAATS
301 GAGNVDVYAQ TRADIQTERT YGSIASNAMK WVPLLNVVLT VLFYALFPVL FPLFLLPKTG
361 PLALKGYVTG FFYLAAWGPL FVILHMMLMY KGAADMSAVA GGNGLSLASF TGMADVNSDI
421 GLLAGYLIAS VPFLAGGVAK GAMAISHHAT SYLNPSQNAA EEAAREASTG NVSLGNTSFE
481 NSSVLTRQFA QGTIAPSFTY GAAQTRTFSD TGSMTTSFPE ASYDQLPNSS YPFTPSLGQE
541 FTSRLSTMAS QARSNSESYA NIATESTTSA VTKFRELRSQ FSRGSAFESA TGTSNSDSIQ
601 TAFNEVDQAS TNLQRQFGLS RRAADDISTA WFLGGEAGAK AGVTNGVASA SVGLKGGGTR
661 TWTDSDIGIA SEDRSRIFGS LAQMSDSRNW SSTRDGFVRS VSSSSSSSIS STASGMNASL
721 TEAQSYSREA RRAEELANRL ESQASFFEGN SAAGSLNLSQ AFREWGLVEI ERNRDFYGNV
781 RFDDLTFQLS PEGQALQGKF IESYAEQLRD GIEDRLVLTP GPPISRPSVT GPGSVRGRAQ
841 NGGGVSGNVP QVDPGVIHDE VLRAQDAGRE RIRGSRGRLD AVTKGAQGAS AESADEVKEW
//