LOCUS AMU96436.1 453 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 acetyl-CoA
carboxylase biotin carboxylase subunit protein.
ACCESSION CP013342-3471
PROTEIN_ID AMU96436.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_17690"
/EC_number="6.4.1.2"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003047751.1"
/note="an AccC homodimer forms the biotin carboxylase
subunit of the acetyl CoA carboxylase, an enzyme that
catalyzes the formation of malonyl-CoA, which in turn
controls the rate of fatty acid metabolism; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MAIEKLLIAN RGEIALRIHR ACHEMGIKTV AVHSTADADA MHVRLADEAV CIGPPAAKDS
61 YLNIPAIISA AEVTGADAIH PGYGFLSENA RFAEIIEAHD MIFVGPKPEH IRTMGDKVEA
121 KRTAVALGLP VVPGSPGAVT YGEETKRMAE EIGYPVLIKA ASGGGGRGMK VVPDPSGLES
181 LMGQASSEAA AAFGDPTVYM EKYLGNPRHI EFQIFGDGKG NAIHLGERDC SLQRRHQKVL
241 EEAPSPVISA EERARMGGIC ADAMAKMGYR GAGTIEFLWE NGEFYFIEMN TRIQVEHPVT
301 EMITGFDLVR EQIRIADGMG LSVQQNELEF RGHAIECRIN AEDPRNFLPS PGKVTNYHAA
361 GGMHVRVDSG LYAGYSIPPY YDSMIGKLIV YGRTRESCMM RMRRALEEMV IGGVKTNIPL
421 HQALLADPDV IHGDYTIKWL EEWLAKQDAD NKA
//