LOCUS       AMU96398.1               860 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 diguanylate
            cyclase protein.
ACCESSION   CP013342-3433
PROTEIN_ID  AMU96398.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_17500"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003047644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQTPEFVGRM MRVAQLWHYV LIGRTVAFFA FAFVPGLSGF LSHPLQWATL VAGLLCDVAL
       61 TVIGQCSRLR WPHRTEWLPT LAAASLALVG AGTFFVSIGT FAALATPDAL SHLDAFSAIR
      121 LGTVLVAAAA AAIVRPAFFA FAGGTAIGGA VGIASWPFGI AGIIFLGMLV VMMREDVRHQ
      181 RRATRVRRQS GSEQQRALGL MRDFERAGRG WFWETDRNGD LVYISPTVAA KLDRPAEDLL
      241 GRPFTDMIRK RGGADESEER TLGFSLSSRT PFNDLTVQAA VAGEERWWSI SGHPISNALG
      301 NFQGFRGSGT DLTEKRKSEQ QINQLARYDT LTGLANRLHI TDLLERALKN HLGQAQPCAL
      361 LLMDLDRFKA VNDTMGHPVG DQLLQQVAAR LTQVVGDKGQ VGRLGGDEFQ IVLPQITQVE
      421 KLAGIANAII LSLAKPFLIE GERIRIGSSI GIAISESDGI GSSAVVRNAD LALYAAKDAG
      481 RGVYRFYADA MHNQASERKA IEDALRDALA KDELKLLYQP IVNVCSERIS GFEALIRWQQ
      541 GGDAVISPSK FIPIAEESNL IVPIGEWIIR TACATIARLG QEYRVAVNVS PRQFANEKLP
      601 ATILSAVAAA GIRPDQLELE ITEGVFLDES PENLEMFQRL KRTGVRLALD DFGTGYSALG
      661 YLKKAPFDKI KIDQSFVLGA ADPSSMNAAI ISSIVGLATA LKMETTAEGV ETHDDLALIR
      721 GLGCSHVQGY IYGKPMTVEE VLALLADGNG KAVAQGYKSA REARMRTFRT IQIASGGYRY
      781 EAIVRNLSSR GALIEGLWNV PAGTSLLIEF GADVVMDAEA RWSDGNRVGV RFAQMVDIGA
      841 LVGGAGAKER RTGGRIDRAA
//