LOCUS       AMU96384.1               655 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 cytochrome
            C biogenesis protein CcmF protein.
ACCESSION   CP013342-3419
PROTEIN_ID  AMU96384.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_17425"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003047603.1"
                     /note="cytochrome c-type biogenesis protein; required for
                     the transfer of heme to apocytochrome c; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIAELGLALL WMAAALACLS LVAGSLYLRS GKGDLAALVR PASVAQGVLT AAAFAMLIAL
       61 FVRSDMSVEL VARNSHSLKP MLFKVAGAWG NHEGSMLLWL TILGLSGALV AIFEKRLRED
      121 TLVATLAAQA ALSLGFFAFL LFSSNPFKRL PIAPPDGQGL NPLLQDPGLA FHPPTLYVGY
      181 VGLSVAFSFA VGALITREIG PAFARAMRPW VLGSWIFLTL GITAGSYWAY YELGWGGWWF
      241 WDPVENVSLI PWLAGAALLH SVSVTATRNA LRAWTVMLAV VAFSMSMVGT FIVRSGLLTS
      301 VHSFAVDPER GTFLLALMAI YIGGALTLFA LRASSVAEGK KFALLSREGS LVINNLLLTT
      361 ILALVLLGTL YPIVAEAMGE KISVGPPYYN KVAGPLALIL CLVMVAGPLL AWRKDDGRKL
      421 WSRLPAAILA GSAVLFGLIL FGGKVGVLPL LGMTVAGIVA VASLAPLWGR NLRRTPLPTW
      481 GMVIAHFGVA VALAGMAAES AFIKERLVAA APGETVTVDD FTVKFVGVRP IAGPNYTAVE
      541 GTLIATTPSG HSFTLRPEAR TFPGLMGGAP TETNEAALLT RPGGQLYAVL GQPVTGADGR
      601 ADRYQLRLWW KPLVWWIWLG GALIAIGAAL SLLGRAQLLA LWHSHRARKA EGRYA
//