LOCUS AMU96368.1 1148 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-3402
PROTEIN_ID AMU96368.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_17340"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_010125509.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRTMLAGIWA VFWLVAALPA AAQIVPDLSP ATAEKVAEND RKELAADLAD RAAISERTLK
61 LIAADRGEKS APYLAKLLVH ANNLSWAHRA PESRQALVRA VEIATALYGA GTYATADVER
121 QYAIALRVNG YREEAIEPFS HYVHALTEEA YGCGRRVPGM VMGCARDDTD LGDTLLEYGQ
181 MLNDVGRGGE AVAAFDTVIA RFEPRWAGCE GPAWGTRCDR ARDKRADMLS SYAALLALVG
241 RADDAGALRK RLFDDSLAAI DACTGDDCEG PDFRLVRRYY DYRAALAGAN HPDDALALDE
301 RILAILVASP HYTKGKAGSG EYFDKDMVND VTGIAEAYAK AAVAAGKADR ARDQLARYGF
361 GALVGTQLAG IDFDAEQKAI EAERRTLSSY GDEIERIANS RRKVALFAGH YGKDSDEYAK
421 ALRDLAWDLD DLPVNDTEAE AVYREALAVE RKAFGAGDFR TLHALDNLTT FLKKRDRSAA
481 AIAVLADVLG DPANDHLALY LDPDRRSARR GSFGDPDDTL NALKADLSEL LLRNRGDPAL
541 ALAAARHAAL GMTSFRDALG FDRFDEMKLD WVTADPWAWL GERRYADYFL LYADALWAKG
601 VHDGAAAEQA FTALQDAMAG TTSRAVARAA AERAAARASV SPLVEERRRI DAEIAALNTK
661 LETLPDDPAE RQRQFSTLQS EIARKDDRRA QVDAAITAAT PDYFALIRPR PLAIAEAQAL
721 LAPDEAFVML VPSEFGTHVL LVTHDALRWN RADMPAAEVN AHVRRLLWDV GASIDVTAEE
781 DAKWSAEGEG DFPFDRGTAW LLYDRLLSPF AADLAGKRHL FTAATGSLSS LPLGILVTEK
841 PTGADGDPAV LRATKWLADG PALLQLPSLQ SLQLLRAVAA RDEGQAGTRM VGFGDPVLEG
901 RAAARGIASA RARGTRSSGL PVTAGLQPAI GDAQPLADPA ALRRLARLPG TEAELKAMQA
961 LLGADAARLY LAGTATETNL KRSDLEHLSV LFLATHGLIA GEVKGLAEPG LVFTPPATAT
1021 PLDDGLLTAS EVAGLHLGAR WVVLSACNTA SGDGSEGAPG LSGLARAFFF AGAESMLASH
1081 WPVRDDVASV LTVRLFELMQ KNPGLSRAEA LQHAMRDIRN DPRADDFLKS WSHPSAWAPF
1141 SLIGDGID
//