LOCUS AMU96366.1 414 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 adenosylmethionine-
8-amino-7-oxononanoate aminotransferase protein.
ACCESSION CP013342-3400
PROTEIN_ID AMU96366.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_17330"
/EC_number="2.6.1.62"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003047539.1"
/note="catalyzes the formation of
S-adenosyl-4-methylthionine-2-oxobutanoate and
7,8-diaminononanoate from S-adenosyl-L-methionine and
8-amino-7-oxononanoate; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSPVWHPFTQ HGLGEPIPLI DRARGARLYD AEGNSWIDAI SSWWVTTHGH AHPQIMAAIR
61 AQTEKLDQLI FAGWTHEPAE SLAAELIRIT PDPLTRVFFS DSGSTSVEVA LKMALGYWFN
121 IGEARSRILV LDHSYHGDTI GTMSVGERGV YNRAWQPLLF DVDAIPFPHE GMEQAALDAL
181 EAACLQKPAA FIVEPLILGA GGMLIYPAWV LAEMRSICAA HGVLFIADEV MTGWGRTGTR
241 FACDQAGVIP DIVCLSKGLT GGAMPLAVTL CSEAIFAAHY SPDRAKTFYH SSSYTANPIA
301 CAAANANLAI WRNEPVQQRI DALADAQAAH LAMLAADPRI TNTRHLGTIA ALDLVVPDAG
361 YLSALAPRLT AFYRDRGVLL RPLGNSVYVM PPYCTGADEL AEIWAAIAAS LDIA
//