LOCUS       AMU96225.1               852 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 DNA topoisomerase
            I protein.
ACCESSION   CP013342-3259
PROTEIN_ID  AMU96225.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_16615"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003043663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQLVIVESPA KAKTIEKYLG RDFKVLASYG HVRDLPPKDG SVDPDDGFSM EWQLYPDKAK
       61 RLKDIQDAAK QADRLILATD PDREGEAISW HVQELLRQKK ALPQKVDRVT FNAITKQAVT
      121 DAMAHPRGLD DDLIDAYRAR RALDYLVGFT LSPVLWRKLP GAKSAGRVQS VALRLVVERE
      181 REIEAFVAQQ YWSITGQFEM GGTPFKARLA RWRGDKIERL TITNEADARA AEADVKAGHF
      241 TVDSVETKPL TRNPPPPFTT STLQQEAARK LGFSASHTMR VAQDLYEDGA ITYMRTDGVQ
      301 MDGSAISAAR RAIADRYDGG YVPDQPRQYQ TKAKNAQEAH EAIRPTDFGK DKVGGGDHAR
      361 LYDLIWKRAL ASQMASARLE RTSIDLSDGT GKTMLRATGQ VVKFPGFLAL YDESRDDSAD
      421 DEDARLLPAM AKGDAPAKTG VEVEAHETQP PPRYSEASLV KKMEELGIGR PSTYASILQV
      481 LKDRAYVRVE KNRFLPEESG RLLTAFLERF FGRYVEYDFT AGLEEELDDV SGGRAQWQAV
      541 LERFWRDFKP RTGEVMEQKP SEITAALDEF LGPYLFPDKG DGSDPRVCPN CGTGRLALRG
      601 GRFGPFIACS NYPECKFTRK FAQPGGSDGA DSGPETLGTD PESGLEVTKR SGRFGPYIQL
      661 GDGKEAKRSS IPKDIPAEDF DLDYALRLLS LPRDVGTHPE SGKPIVAGLG RYGPYLLHDG
      721 KYAKLTGTAE IFDIGMNAAV ARIADAANGG GRGTRAKAEP LKTFGPHPTS GGEMKLMAGR
      781 FGPYVTDGTT NATLPKTVEP DALTVEEAVA LIDARAAKGP AKGKKKTPAK KAAAKKPAAK
      841 KAPAKKKAAK DA
//