LOCUS AMU96212.1 426 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 O-acetylhomoserine
aminocarboxypropyltransferase protein.
ACCESSION CP013342-3246
PROTEIN_ID AMU96212.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_16550"
/EC_number="2.5.1.49"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003043624.1"
/note="catalyzes the formation of L-methionine and acetate
from O-acetyl-L-homoserine and methanethiol; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MSNHKPETLS VHAGTAPDPT TKARITPIYQ TASYVFDDVD HASRLFNLQE FGNIYTRIMN
61 PTNGALEGKI AALEGGQAAL AVASGHAAQF LAFHTIMEPG CEIVAAKKLY GGSLNQLGQS
121 FRKMAWTTHF VDADDPANVA AAINDRTRAV FIESLANPGG VVQDIAAIAK VAHDAGVPLI
181 VDNTMATPML CRPIEHGADI VVHSATKFLN GHGNAIGGLI VDAGTFDWSK GGKYPALSEP
241 NASYHGLTFT EAFGPLAFIL AARTLGLRDL GPALAPMNAF LALTGMETLA LRMDRHCSNA
301 LALAKWLQDH PAVSWVSYAG LRGSPYHDLA HKYLGGRGGA VFTFGLQGGY DAGVKLVSAV
361 KLFSHLANLG DTRSLIIHPA STTHSQLSEA ELVEAGAGPD VVRVSVGIEH IDDIIADLAQ
421 ALETEA
//