LOCUS AMU96201.1 592 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical protein protein. ACCESSION CP013342-3234 PROTEIN_ID AMU96201.1 SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098 ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 3979087) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284143 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3979087) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 2.8 Genome Coverage :: 110x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:33:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,797 CDS :: 3,699 Pseudo Genes :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098" /mol_type="genomic DNA" /strain="203-1" /sub_species="terrae" /culture_collection="NBRC:15098" /type_material="type strain of Sphingomonas terrae" /db_xref="taxon:1219058" /geo_loc_name="Japan: Kyoto" /collection_date="1974" protein /locus_tag="AOA14_16490" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003043591.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTDSIASGAA PDSPMLSTRL DDSDPPWPQR PWVMAALCAT AGLLFHACVD HDYGDPLDRW 61 RMALATFVAV ATLVFTLGME IRRVHWAAGF ALLWGAIMAL IVWNGAGYNF DASPFEWPFW 121 SGLLAVLVAT PLFQTRRDVA PDGRFWKLWQ MPYDRLHSHA WTDAVIGAAS LAFVGLSFLL 181 TVLIGEMFHL IGIDLIRELL RGEWFGWMLA GAAFGGAVGL LRERDKLVAT LQRLVMIVLS 241 VLAPVLAAAL LIFLLSLVGT GLQPLWRSGF STAALMMAAA AFAVLLANAA IGNGREERAG 301 NLLLHVAAAA LVAVVLPLAV IAFYSMHLRV LQYGWTPERL WGVIAAVIAV AYGISGLWSV 361 VRGRHDFDDL LRPLQQKLAI GLVLLAGFLA LPIVDFGAIA TRDQLARLES GKVGADKFDW 421 AALAFDFGPS GRQALARLAK SPDKARANRA KIAMSAKNRW DLGPGDDGDA AEVAYRATPL 481 ADKVRVLPAG RTLIPEVENA IEDQQWCRDA PCILYWLSDQ RVAVIGRGQA RVMMLERDAK 541 GRWSQNYAFE GSPSRGDTAL TIDDLVKAPV ELRTVQRRQL FVGGKAVGGN FE //