LOCUS AMU96199.1 493 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 glutamyl-
tRNA amidotransferase protein.
ACCESSION CP013342-3232
PROTEIN_ID AMU96199.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /gene="gatA"
/locus_tag="AOA14_16480"
/EC_number="6.3.5.-"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003043585.1"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MTDLTNLTVA EIRDGHRAGD FSAVEVAEAF NANVAAAKAL NAFIVETPDR AIEAAKAADS
61 DRAAGTLKPL SGVPIGMKDL FATNGVQTTA ASHMLEGFVS RYESTVSQKL WDAGCGMLGK
121 LNLDQFAMGS SNETSYFGNV ISPWKRNDGG NAALAPGGSS GGSSAAIAAR LCPAATGTDT
181 GGSIRQPAAF TGISGIKPTY GRCSRWGIVA FASSLDQAGP MARDVRDCAI MLENMAGFDP
241 KDATSLDLPV PNWEAALSSD LKGKKVGIPK EYRLEGIDPE IDAMWDAGIA MLKDAGAEVV
301 EISLPHTKYA LPTYYIIAPA EASSNLARYD GVRYGLRDLP QGAGLQDMYA ATRADGFGPE
361 VKRRIMIGTY VLSAGFYDAY YTQAQKVRAL ISRDFTAAFE TCDVILAPTA PSAAFGLGEK
421 TADPLSMYLN DVFAVPASLA GLPAMSVPAA LNREGLPLGL QIIGKAFDEQ GVLNAGLAIE
481 ERAGFTARAE KWW
//