LOCUS AMU96161.1 1000 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 conjugal
transfer protein TraA protein.
ACCESSION CP013342-3194
PROTEIN_ID AMU96161.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_16275"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_017671412.1"
/note="MobA/MobL family protein; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MALYHFSAKV ISRAAGSSAV AAAAYRSADR LHDERLGRAH DFSNKTGVVH SEVLLPEGTD
61 EAWLDREQLW NDVEAAELRK DAQLAREIEF AIPREMTNEQ GIALARDFVQ SEFVERGMIA
121 DLNVHWDVGA DGLAKPHAHV MLTMREIRIG EDGSAEFGAK VRDWNRTELL THWREAWAAH
181 VNERLASLDI DARVDHRTLE AQGIDLEPQH KIGAAASRMA GQGLEADRLA EHLEIARSNG
241 DKILADPSIA LDAITHRQAT FTTRDLAMFV HRHSDGKEQF DAVMAAVKAS PELVALGKDG
301 RGEDRFTSKS MIETEQRLER ATATLDARRH HGVAERHREL ALSRASKRGL DLSTEQRGAL
361 EHVTSARGVS NVIGYAGTGK STMLGVAREV WEAAGYQVQG AALSGIAAEG LEHGSGIGSR
421 TLASLEYQWA NDRERLTDKH ILVIDEAGMV GTRQLERVVS EAERQGAKVV LVGDPEQLQA
481 IEAGAAFRAA AERHGAVEIM DIRRQQEEWQ RDATRELATG RTGEAIARYA EAGFVRVADT
541 REGARAELVD AWDRDRQAYP DASRIILTHT NDEVRELNEA VRERLKAGGA LGNEVALAVE
601 RGERSFAAGD RIMFLKNERD LGVKNGSLGS VDSVSPARIA VTLDDGRRVA FDLKDYAHVD
661 HGYAATIHKA QGMTVDRVQL LATPGMDRHG AYVAMSRHRE AIDVHYGKDD FASQAKLVRT
721 LGRERGKDMA SDYRAKNMGT EQPPKAAEPK RSMFDGLKLT VSREPLPEEE EPRLRRAANL
781 SDVRVSARAL DPAAPPSALN KAIERFARVT KEIVDVRRAG GKELPHELER YREARHALDA
841 LRPDGASDLR EAFGKSYKLA SEAAEGRTVG AIAAMDSAVA ARAAEHAAER AAVDRAAREQ
901 VRQAAAAKRL AAELDKRAEL FVATWKTESM QARKAPTYAA RDAARANLNE MAMNLHRDPQ
961 LESLLQSRRA DLGLKSSATG SLSHDLQQYL GRGRSMGISM
//