LOCUS AMU96113.1 2737 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-3144
PROTEIN_ID AMU96113.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_16020"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_013040493.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MGLKRNEQAG EIATPARATP PGAASILPVD GVIQLPPGTR LDAIKLSGND LVVTLPDGQV
61 LVIVDGALRI PHIKVGPINI PAPTVAALIA DQEPEPAAGR PQSSGGNFAQ TPGDIGDPFA
121 LGNLLPPTEF GFPKIPALEV IPDALDDKPR VVITTPDQTV GVTAATAVVS EAALPARDAE
181 PAGSNPDSPG ETTSGTIQIA ALDQPVVVTV NGTAVTAVGQ LIPTPLGQLT ITSIAPGLIG
241 YTYTLTDNST DPAATDTVTI TVTDNDGDVG SATLTLMLED DAPIARADID DIEAGSRLPE
301 SGNVITGAGT ASGADGADTP GADGAIVTGV RGGSATEFGP TGTPVQGQYG RLAIAADGTY
361 AYVRSAGTPG GVSDVFTYQL TDGDGDVSTA TLTIRIGDSA PALILPAAGD DGTLVDEAGL
421 PERDGESPGS RSGDDSNFTS GTIQFSAGDG PAALTINGVA ITEEGQEIAL TTGTFYIVSI
481 NPDSIEYLFA LADNTLGAAT SQPITVGITD LDGDTISASF DIDILDDAPE AVADYDSVAA
541 GSFAPATGNV ITDAENDGGR DIPGADGASV SSVSGGGAAV AAGDPVAGLY GVLTLNSNGS
601 YSYVRNPDTP GGVSETFTYT LTDSDGTFAT ATLNIAIADD RPDAVADEGE VGEGQTLEVD
661 AAGGLLANDD LGADGTKILG VRAAGADPSA AATGGVGAVI IGLYGELTVA ADGSYIYVAN
721 PNIVPPGTAE DVFVYTLVDG DGDQSTTTLT IRLSDSGLYA DVVQLQVDEA ALAAGSDPES
781 DAETASGDLN DNVVGGTGPF EFGLVGNGVG THGVFTLNSD GSYSYTLTGA IDGPTDDDGT
841 NLVPTVESFT YTITDAFGNV TQSEIVIDVL DDVPVARPAP SITVAEDAAA ISGDLLGNDT
901 LGTDGAMVTS VTIGSAIVAV AATGITSYNT ANGTYTFQAN GAWSFDPAPQ VSVFPIHADF
961 TYTITDGDGD QSSAVQQIRL ADGSLPTASG PIQLTIDDQH LETGSRPSPA QPVSASGTIL
1021 FTPGSDAIAS IGFGDISALD GGLSWTLGSD NQIIGWDADE NPVVVIGLSV SGNVATVTAT
1081 LQYNYALHPD TTIDDLVDLG AIEVVAIDAD GDIVAGTVSI SVSDDVPSIT ALSPTTGLLT
1141 VDETDLGFDA TADFTKLFKI VMGADEGTVG YSFEVTTASG LVDVATGSKI ILQAFGNVVE
1201 GRLQDSPTTV AFRLTVASDG QATLNQIRAV RHPDDMNPDD AITLSPTIIR LTATVTDADG
1261 DHASALVAIG NALVFKDDGP SIDATNVDTN AITLTTQDAN TRGDAFDVAT ANFSAAFSTS
1321 LVNFGADGSA DAGTVTWTYS LALGSAAATS ALTSHGVPVT LAIISGEIVG SAAGTPIFSI
1381 AVNAATGVVT LTQFAEIDHP LPGSPGDYAA QLVELAANLV ELRGTATIVD RDGDSISDTV
1441 AVDLGGNIRF ADDGPSIAAG GTASPLTVDE SNFAADATVD LSGLFAGTTD AGADGPGAVT
1501 YELGVAAGAS GLIDSLTGEA VILSIEGGVV FGRTSTHEVF RISVVPGGLV TFDQSRAILH
1561 TPDSGPDQAL FLAGSNLITL TAIATDGDGD TARTTTDITG QFAIRDDAPN AVDDQDNVSR
1621 DGEVFADGNV LTGLGGTDAN GMDGSSDNAG ADGGLMVVGV AFGASTGTPG AVLSGNYGSI
1681 VIAADGSYRY DLDPSDPAVV ALNPDTTLTE SFEYTVRDAD GDTSVATLTI SITGINDFPV
1741 ARGDTNWVLD GVSGSDPFAA GNVLQDIAHS GAPFGSFADV ADNDPDLEVI TVTSAGTYVG
1801 LYGTLVIDAG GSYTYTLDED KPVVNALDSG QTLTESFAYT ISDGSLSVGS TLTITVFGNN
1861 DVPTIGTAIA RVSEEGLPSG LPDTAPNATL DTTNSAVISG TLAIADADAG ETLTATLGDP
1921 GAVLTAGGSA VAWTGVGTGT LIGSVGGSEV IRVTLASNGA YTVTLLRAVD HPNVTLEDLK
1981 GFSVPVSVFD GTTTTTSASA IQIVIEDDAP TATGETGSSS QPMQDVNTLF ILDFSASIDD
2041 GELNTMLDAV QGALTQLDSA ASGALAIKFV IFSSGSFASE SFSTAADANA YLDSLNPAAG
2101 GQRPSEDDIG LNTNYSGAIQ TALANFAAIP GASNQVFFLS DGNPNQQIQF GGIPPSVINS
2161 LTAATATAWD DFVDGNGVNV TAIGIDNNPL QPLNIQRLQD IDLNAAPGNA PILVDDFEDL
2221 VPTLLSVIVP SAVSGDLDAN DFLGADGGRL LSITVGSTTY NWDGASSIAV SSGGSIAGTT
2281 LNAIATPMGG TLTLNFATGQ YNYQPPSPIT VTATEVFTYV LTDRDGDTAT ANLSVTITAL
2341 APPIAVDLDG DGVEFVSNAA GASFDYDGDG IAETTAWVGA DDGLLAIDKN GDGKVNNGSE
2401 LVFGSGVLSD LQGLAAAYDS NGDGKLDAAD AEFSKFGIWQ DANGNGMTDA GEFRSLVSEG
2461 IIAISLTPDG RAYVAANGQV EVRGEALYTR ADGITGKLAD AAFATNFADQ QRIAAINGTA
2521 GVSTAMLVAG LAATAPLAAY PPGAPDGEIS VSGPQVPVSS EAAEQSLTLP EAKADGLVHE
2581 FYSGPEIARI EREDTSCRIS DDDRDAVHDD TADTAPPDPD YVGLLAATEI DLPPEPASSS
2641 ASGDQIQLTT TPQPVTATAA AQIGTIVTAA LEGPAVELDA LLGPVEPAEP VLARIMLGVG
2701 GIGDGIGGGA SGHSFIADLT QQHVVVQLEQ IASAGHA
//