LOCUS AMU96017.1 522 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 methionine-
-tRNA ligase protein.
ACCESSION CP013342-3048
PROTEIN_ID AMU96017.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_15520"
/EC_number="6.1.1.10"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003051680.1"
/note="methionine--tRNA ligase; MetRS; adds methionine to
tRNA(Met) with cleavage of ATP to AMP and diphosphate;
some MetRS enzymes form dimers depending on a C-terminal
domain that is also found in other proteins such as
Trbp111 in Aquifex aeolicus and the cold-shock protein
CsaA from Bacillus subtilis while others do not; four
subfamilies exist based on sequence motifs and zinc
content; Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSEPFYITTA ISYPNGRPHI GHAYEAIATD VMARFQRMRG RDVRLITGTD EHGLKMYQTA
61 RDQDRATIDL ADEMSGYFRE MYGKLNISYD NFMRTSDPAH HRASQAIWRA MEANGDLYLD
121 RYEGWYSVRD EAFYDESELT DGEGGVRLSP QGTPVEWTVE ESWFFRLSAY QDRLLALYKD
181 NPDFIRPESR RNEVLRFVEG GLKDLSVSRT SFDWGVPVPG SPGHVMYVWV DALTTYLSGI
241 GYPDMDGDFV RFWPANIHMI GKDIVRFHTV YWPAFLMSAG LPLPRQVFGH GFLLNRGEKM
301 SKSLGNVVDP MTLAEQFGVD ALRYYLLREV SFGQDGSYSA EAIVRTANAD LANSFGNLAQ
361 RSLSMIFKNL DGEISNDYSP SEEDLALRSA VRDAAVNLLP REFEELSFSV GIEEWLRAVF
421 ACNQYVDTQA PWALRKTNPE RMRAVLMTLF RAIRTLAIAI RPVVPSAADA LLNQMGIADD
481 ARDFAALADT EWFAKLAASG FAVGQPIPIF PRLELPEGEG EA
//