LOCUS AMU96010.1 763 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 PAS domain-
containing sensor histidine kinase protein.
ACCESSION CP013342-3041
PROTEIN_ID AMU96010.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_15485"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003051696.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTQPFPSALD GEPGDTDARS GWWRFGAPEY YTLALIASVA IGTYIFVTGD AQSERLLTPA
61 LVAAIMVANL VPAMALIVLI GSRVARARAE RTMDGGNGRL HVRLVALFSL IAATPTLLVV
121 IFASLLFQFG VDFWFSDRSR GMFENAASLA QGYYQENQRE VSANTFAMAK DLSDQLGRVA
181 IDSPEFSDYY FQQVVVRSLN ESAIIEIGTD GIPRTAAMID PDKRAVESRL TPATVKRLDA
241 GEQVVVNVQP DRIEAVTKLP RQPRAYVYAS RDANVPGFQQ SMRASTVLAD YNDLFQRSQQ
301 LQLQFNGALY LGSLLLLALA VVAAIVVADR ITRPLGTLIV ATRTAARGDL SVRVTPPARD
361 DEIAVLTRAF NRMTEQLEGQ TSALVNVNEQ LETRRSFIEA VLSGVSSAVV SVDAQHHILL
421 ANAAAESLIG QSAETLTGRP LGDVAPELAA LLSGGEQEGI VQLARRDAEP ATLAAKAVAQ
481 GDGFVLSFED ITQQLLDQRR AAWSDVARRI AHEIKNPLTP IQLAAERLQR RFGEKVEGDA
541 ATFRKLTDTI VRQVHDMRRM VDEFSSFARM PKPTFGVEDI RDILRQAVFL FEVAKPDIIF
601 SVKTPNEIEP LVCDRRLLSQ ALTNIVKNAV EAIEENTKKS DGPVSGHIRA ELDIGPQDAV
661 VIRVTDDGIG LPEARDAIAE PYMTTRQGGT GLGLAIVKKI VEQHYGELEF SDNPEGRGTQ
721 VTLTLHADRL RPLAGKGGGV PTGQIESVPG RIRNRQDREE HGA
//